Hb_004032_080

Information

Type transcription factor
Description TF Family: MIKC
Location Contig4032: 108937-113119
Sequence    

Annotation

kegg
ID tcc:TCM_036541
description K-box region and MADS-box transcription factor family protein isoform 1
nr
ID XP_012073507.1
description PREDICTED: agamous-like MADS-box protein AGL11 [Jatropha curcas]
swissprot
ID Q38836
description Agamous-like MADS-box protein AGL11 OS=Arabidopsis thaliana GN=AGL11 PE=1 SV=1
trembl
ID A0A067KWT3
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_07991 PE=4 SV=1
Gene Ontology
ID GO:0005634
description agamous-like mads-box protein agl11

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_39986: 108954-114191
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_004032_080 0.0 transcription factor TF Family: MIKC PREDICTED: agamous-like MADS-box protein AGL11 [Jatropha curcas]
2 Hb_002843_160 0.1417436441 - - PREDICTED: leucine-rich repeat receptor-like protein kinase PEPR1 [Jatropha curcas]
3 Hb_004884_060 0.1548790834 transcription factor TF Family: G2-like PREDICTED: putative Myb family transcription factor At1g14600 [Jatropha curcas]
4 Hb_002989_080 0.1620978463 - - hypothetical protein JCGZ_22462 [Jatropha curcas]
5 Hb_007178_010 0.1642906421 - - pseudo-hevein [Hevea brasiliensis]
6 Hb_000907_100 0.1699387736 transcription factor TF Family: zf-HD hypothetical protein POPTR_0012s03770g, partial [Populus trichocarpa]
7 Hb_000571_070 0.173194586 transcription factor TF Family: G2-like PREDICTED: putative Myb family transcription factor At1g14600 [Jatropha curcas]
8 Hb_000249_110 0.1749092309 - - hypothetical protein JCGZ_22462 [Jatropha curcas]
9 Hb_002067_160 0.1757272289 - - Protein MLO, putative [Ricinus communis]
10 Hb_014067_010 0.1786780733 - - hypothetical protein JCGZ_09524 [Jatropha curcas]
11 Hb_002301_020 0.1803442407 transcription factor TF Family: NAC NAC transcription factor [Hevea brasiliensis]
12 Hb_000270_420 0.1815096644 - - actin binding protein, putative [Ricinus communis]
13 Hb_027751_020 0.1815293231 - - PREDICTED: uncharacterized protein LOC104886652 [Beta vulgaris subsp. vulgaris]
14 Hb_002232_180 0.1815297142 - - PREDICTED: DUF21 domain-containing protein At2g14520-like isoform X1 [Populus euphratica]
15 Hb_000155_070 0.1840007085 transcription factor TF Family: NAC NAC transcription factor [Hevea brasiliensis]
16 Hb_001911_030 0.1841076233 - - PREDICTED: disease resistance RPP8-like protein 3 [Jatropha curcas]
17 Hb_138413_010 0.1846277252 - - hypothetical protein JCGZ_09524 [Jatropha curcas]
18 Hb_001476_100 0.1858603782 - - conserved hypothetical protein [Ricinus communis]
19 Hb_001425_120 0.1865067336 - - PREDICTED: isoprenylcysteine alpha-carbonyl methylesterase ICME isoform X2 [Jatropha curcas]
20 Hb_005488_100 0.1884605726 - - hypothetical protein JCGZ_00295 [Jatropha curcas]

Gene co-expression network

sample Hb_004032_080 Hb_004032_080 Hb_002843_160 Hb_002843_160 Hb_004032_080--Hb_002843_160 Hb_004884_060 Hb_004884_060 Hb_004032_080--Hb_004884_060 Hb_002989_080 Hb_002989_080 Hb_004032_080--Hb_002989_080 Hb_007178_010 Hb_007178_010 Hb_004032_080--Hb_007178_010 Hb_000907_100 Hb_000907_100 Hb_004032_080--Hb_000907_100 Hb_000571_070 Hb_000571_070 Hb_004032_080--Hb_000571_070 Hb_002843_160--Hb_002989_080 Hb_000249_110 Hb_000249_110 Hb_002843_160--Hb_000249_110 Hb_000789_190 Hb_000789_190 Hb_002843_160--Hb_000789_190 Hb_014067_010 Hb_014067_010 Hb_002843_160--Hb_014067_010 Hb_002843_160--Hb_004884_060 Hb_003906_110 Hb_003906_110 Hb_002843_160--Hb_003906_110 Hb_004884_060--Hb_003906_110 Hb_004884_060--Hb_000249_110 Hb_004884_060--Hb_000907_100 Hb_004884_060--Hb_002989_080 Hb_004884_060--Hb_007178_010 Hb_002989_080--Hb_003906_110 Hb_000603_200 Hb_000603_200 Hb_002989_080--Hb_000603_200 Hb_002989_080--Hb_007178_010 Hb_004545_150 Hb_004545_150 Hb_002989_080--Hb_004545_150 Hb_002232_180 Hb_002232_180 Hb_002989_080--Hb_002232_180 Hb_007178_010--Hb_002232_180 Hb_007810_040 Hb_007810_040 Hb_007178_010--Hb_007810_040 Hb_002067_160 Hb_002067_160 Hb_007178_010--Hb_002067_160 Hb_005488_100 Hb_005488_100 Hb_007178_010--Hb_005488_100 Hb_007178_010--Hb_003906_110 Hb_010931_100 Hb_010931_100 Hb_007178_010--Hb_010931_100 Hb_000155_070 Hb_000155_070 Hb_000907_100--Hb_000155_070 Hb_000907_100--Hb_000571_070 Hb_002301_020 Hb_002301_020 Hb_000907_100--Hb_002301_020 Hb_004126_010 Hb_004126_010 Hb_000907_100--Hb_004126_010 Hb_000907_100--Hb_003906_110 Hb_027751_020 Hb_027751_020 Hb_000571_070--Hb_027751_020 Hb_000563_540 Hb_000563_540 Hb_000571_070--Hb_000563_540 Hb_000264_190 Hb_000264_190 Hb_000571_070--Hb_000264_190 Hb_002609_260 Hb_002609_260 Hb_000571_070--Hb_002609_260 Hb_002301_320 Hb_002301_320 Hb_000571_070--Hb_002301_320 Hb_000571_070--Hb_010931_100
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.421906 0 0 0.0339947 0.182449 0.416308
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0862187 0.135549 0.240576 0.0552659 0

CAGE analysis