Hb_004032_100

Information

Type -
Description -
Location Contig4032: 126903-133755
Sequence    

Annotation

kegg
ID pxb:103967624
description regulator of nonsense transcripts UPF3-like
nr
ID XP_012073511.1
description PREDICTED: regulator of nonsense transcripts UPF3-like [Jatropha curcas]
swissprot
ID Q9FVW4
description Regulator of nonsense transcripts UPF3 OS=Arabidopsis thaliana GN=UPF3 PE=1 SV=1
trembl
ID A0A067KKT4
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_07993 PE=4 SV=1
Gene Ontology
ID GO:0000166
description regulator of nonsense transcripts upf3-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_39990: 126996-129158 , PASA_asmbl_39991: 130047-130924 , PASA_asmbl_39992: 131031-133362
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_004032_100 0.0 - - PREDICTED: regulator of nonsense transcripts UPF3-like [Jatropha curcas]
2 Hb_000024_080 0.0543643694 - - PREDICTED: probable complex I intermediate-associated protein 30 isoform X2 [Jatropha curcas]
3 Hb_000087_020 0.0604822052 - - PREDICTED: peptidyl-tRNA hydrolase 2, mitochondrial [Jatropha curcas]
4 Hb_000751_130 0.064751811 - - PREDICTED: mitochondrial import inner membrane translocase subunit tim16 [Jatropha curcas]
5 Hb_180301_010 0.0673310064 - - PREDICTED: uncharacterized protein LOC105647918 isoform X1 [Jatropha curcas]
6 Hb_000787_140 0.0712047288 - - Trafficking protein particle complex subunit, putative [Ricinus communis]
7 Hb_000085_320 0.0723542603 - - Uncharacterized protein TCM_030749 [Theobroma cacao]
8 Hb_015175_030 0.0731154128 - - PREDICTED: RNA-binding protein 24-A [Jatropha curcas]
9 Hb_000024_030 0.0735854213 - - PREDICTED: tetratricopeptide repeat protein 5-like [Populus euphratica]
10 Hb_000230_540 0.0738921991 - - PREDICTED: glycine-rich RNA-binding protein 3, mitochondrial [Sesamum indicum]
11 Hb_000086_550 0.0739690381 - - Os02g0814700 [Oryza sativa Japonica Group]
12 Hb_000707_030 0.0741434346 - - PREDICTED: probable proteasome inhibitor [Vitis vinifera]
13 Hb_001505_020 0.0755248236 - - PREDICTED: 26S proteasome non-ATPase regulatory subunit 9 [Jatropha curcas]
14 Hb_007735_030 0.0756332228 - - Calcium-binding EF-hand family protein isoform 1 [Theobroma cacao]
15 Hb_005400_030 0.0759927918 - - PREDICTED: LYR motif-containing protein At3g19508 [Jatropha curcas]
16 Hb_000172_030 0.07999818 - - PREDICTED: protein SCO1 homolog 2, mitochondrial [Jatropha curcas]
17 Hb_148209_080 0.0809765019 - - MED32, putative [Theobroma cacao]
18 Hb_000340_140 0.0825944795 - - PREDICTED: BTB/POZ and MATH domain-containing protein 2-like [Vitis vinifera]
19 Hb_005398_030 0.0829913545 - - PREDICTED: 3-hydroxyisobutyryl-CoA hydrolase 1-like [Jatropha curcas]
20 Hb_003964_100 0.0837735304 - - PREDICTED: uncharacterized protein LOC103489178 [Cucumis melo]

Gene co-expression network

sample Hb_004032_100 Hb_004032_100 Hb_000024_080 Hb_000024_080 Hb_004032_100--Hb_000024_080 Hb_000087_020 Hb_000087_020 Hb_004032_100--Hb_000087_020 Hb_000751_130 Hb_000751_130 Hb_004032_100--Hb_000751_130 Hb_180301_010 Hb_180301_010 Hb_004032_100--Hb_180301_010 Hb_000787_140 Hb_000787_140 Hb_004032_100--Hb_000787_140 Hb_000085_320 Hb_000085_320 Hb_004032_100--Hb_000085_320 Hb_000024_080--Hb_000087_020 Hb_010180_020 Hb_010180_020 Hb_000024_080--Hb_010180_020 Hb_000676_290 Hb_000676_290 Hb_000024_080--Hb_000676_290 Hb_004128_190 Hb_004128_190 Hb_000024_080--Hb_004128_190 Hb_005398_030 Hb_005398_030 Hb_000024_080--Hb_005398_030 Hb_000444_050 Hb_000444_050 Hb_000087_020--Hb_000444_050 Hb_000087_020--Hb_005398_030 Hb_005997_010 Hb_005997_010 Hb_000087_020--Hb_005997_010 Hb_000087_020--Hb_000751_130 Hb_001829_060 Hb_001829_060 Hb_000751_130--Hb_001829_060 Hb_000274_020 Hb_000274_020 Hb_000751_130--Hb_000274_020 Hb_000046_110 Hb_000046_110 Hb_000751_130--Hb_000046_110 Hb_000172_030 Hb_000172_030 Hb_000751_130--Hb_000172_030 Hb_004336_050 Hb_004336_050 Hb_180301_010--Hb_004336_050 Hb_180301_010--Hb_000172_030 Hb_004374_140 Hb_004374_140 Hb_180301_010--Hb_004374_140 Hb_180301_010--Hb_000751_130 Hb_007735_030 Hb_007735_030 Hb_180301_010--Hb_007735_030 Hb_000787_140--Hb_000172_030 Hb_001437_230 Hb_001437_230 Hb_000787_140--Hb_001437_230 Hb_000787_140--Hb_000087_020 Hb_000787_140--Hb_000024_080 Hb_000787_140--Hb_000751_130 Hb_002874_190 Hb_002874_190 Hb_000085_320--Hb_002874_190 Hb_000007_100 Hb_000007_100 Hb_000085_320--Hb_000007_100 Hb_001008_060 Hb_001008_060 Hb_000085_320--Hb_001008_060 Hb_001383_060 Hb_001383_060 Hb_000085_320--Hb_001383_060 Hb_000380_190 Hb_000380_190 Hb_000085_320--Hb_000380_190
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
7.25908 3.08906 2.95592 8.51242 8.13993 16.6329
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
16.2336 21.423 12.9553 6.69249 4.00912

CAGE analysis