Hb_004032_150

Information

Type -
Description -
Location Contig4032: 167133-176398
Sequence    

Annotation

kegg
ID rcu:RCOM_1602630
description Chaperone protein dnaJ, putative
nr
ID XP_012073517.1
description PREDICTED: chaperone protein dnaJ 10-like [Jatropha curcas]
swissprot
ID Q8GYX8
description Chaperone protein dnaJ 10 OS=Arabidopsis thaliana GN=ATJ10 PE=2 SV=2
trembl
ID A0A067KWU7
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_07996 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_39994: 167248-176358 , PASA_asmbl_39995: 174687-175188 , PASA_asmbl_39996: 167899-169331 , PASA_asmbl_39997: 172004-172458 , PASA_asmbl_39998: 175422-175723
cDNA
(Sanger)
(ID:Location)		 039_L03.ab1: 167260-172460

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_004032_150 0.0 - - PREDICTED: chaperone protein dnaJ 10-like [Jatropha curcas]
2 Hb_004767_100 0.0487791331 - - eukaryotic translation initiation factor 2c, putative [Ricinus communis]
3 Hb_007416_280 0.0592515049 - - conserved hypothetical protein [Ricinus communis]
4 Hb_001638_170 0.0593239124 - - hypothetical protein Csa_3G118170 [Cucumis sativus]
5 Hb_000318_290 0.0620581989 transcription factor TF Family: B3 PREDICTED: B3 domain-containing transcription factor VRN1 isoform X1 [Jatropha curcas]
6 Hb_148644_010 0.0624679645 transcription factor TF Family: mTERF conserved hypothetical protein [Ricinus communis]
7 Hb_001489_150 0.0629293692 - - PREDICTED: uncharacterized protein LOC105123623 isoform X2 [Populus euphratica]
8 Hb_011485_070 0.0644988619 - - Ubiquitin carboxyl-terminal hydrolase, putative [Ricinus communis]
9 Hb_002675_070 0.0662042959 - - PREDICTED: protein CASC3 [Jatropha curcas]
10 Hb_143629_210 0.0692427007 - - PREDICTED: transcription factor PIF3 isoform X1 [Jatropha curcas]
11 Hb_000035_320 0.0703701578 - - PREDICTED: ubiquitin carboxyl-terminal hydrolase 22 [Jatropha curcas]
12 Hb_023344_030 0.0703847689 - - PREDICTED: putative G3BP-like protein [Jatropha curcas]
13 Hb_000120_670 0.0706917985 - - PREDICTED: SRSF protein kinase 2-like [Jatropha curcas]
14 Hb_000030_190 0.0708648509 - - PREDICTED: TATA-box-binding protein-like isoform X1 [Citrus sinensis]
15 Hb_019280_040 0.0711856233 - - PREDICTED: pentatricopeptide repeat-containing protein At4g18975, chloroplastic isoform X1 [Jatropha curcas]
16 Hb_005291_030 0.0723319586 transcription factor TF Family: SWI/SNF-BAF60b brg-1 associated factor, putative [Ricinus communis]
17 Hb_010618_010 0.0725675966 - - PREDICTED: inactive poly [ADP-ribose] polymerase RCD1 [Jatropha curcas]
18 Hb_000085_160 0.0733914958 - - hypothetical protein CICLE_v10009012mg [Citrus clementina]
19 Hb_000205_300 0.0734333797 - - PREDICTED: uncharacterized protein LOC105647767 [Jatropha curcas]
20 Hb_000953_020 0.0734846893 - - PREDICTED: serine/threonine-protein kinase CTR1 [Jatropha curcas]

Gene co-expression network

sample Hb_004032_150 Hb_004032_150 Hb_004767_100 Hb_004767_100 Hb_004032_150--Hb_004767_100 Hb_007416_280 Hb_007416_280 Hb_004032_150--Hb_007416_280 Hb_001638_170 Hb_001638_170 Hb_004032_150--Hb_001638_170 Hb_000318_290 Hb_000318_290 Hb_004032_150--Hb_000318_290 Hb_148644_010 Hb_148644_010 Hb_004032_150--Hb_148644_010 Hb_001489_150 Hb_001489_150 Hb_004032_150--Hb_001489_150 Hb_000608_240 Hb_000608_240 Hb_004767_100--Hb_000608_240 Hb_004767_100--Hb_000318_290 Hb_005170_040 Hb_005170_040 Hb_004767_100--Hb_005170_040 Hb_004767_100--Hb_148644_010 Hb_000205_300 Hb_000205_300 Hb_004767_100--Hb_000205_300 Hb_003092_040 Hb_003092_040 Hb_007416_280--Hb_003092_040 Hb_002026_180 Hb_002026_180 Hb_007416_280--Hb_002026_180 Hb_007416_280--Hb_001489_150 Hb_019280_040 Hb_019280_040 Hb_007416_280--Hb_019280_040 Hb_000618_040 Hb_000618_040 Hb_007416_280--Hb_000618_040 Hb_005291_030 Hb_005291_030 Hb_001638_170--Hb_005291_030 Hb_001638_170--Hb_001489_150 Hb_000085_160 Hb_000085_160 Hb_001638_170--Hb_000085_160 Hb_110291_010 Hb_110291_010 Hb_001638_170--Hb_110291_010 Hb_002835_080 Hb_002835_080 Hb_001638_170--Hb_002835_080 Hb_003777_310 Hb_003777_310 Hb_000318_290--Hb_003777_310 Hb_054865_150 Hb_054865_150 Hb_000318_290--Hb_054865_150 Hb_000608_320 Hb_000608_320 Hb_000318_290--Hb_000608_320 Hb_000120_670 Hb_000120_670 Hb_000318_290--Hb_000120_670 Hb_148644_010--Hb_002835_080 Hb_000700_110 Hb_000700_110 Hb_148644_010--Hb_000700_110 Hb_002477_330 Hb_002477_330 Hb_148644_010--Hb_002477_330 Hb_000035_320 Hb_000035_320 Hb_148644_010--Hb_000035_320 Hb_003195_070 Hb_003195_070 Hb_148644_010--Hb_003195_070 Hb_001489_150--Hb_005291_030 Hb_003952_070 Hb_003952_070 Hb_001489_150--Hb_003952_070 Hb_000808_270 Hb_000808_270 Hb_001489_150--Hb_000808_270
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
44.7309 42.5703 25.5093 46.5359 47.8601 79.6009
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
57.9376 51.8956 59.6408 45.4077 27.5198

CAGE analysis