Hb_004032_180

Information

Type -
Description -
Location Contig4032: 185557-190197
Sequence    

Annotation

kegg
ID rcu:RCOM_1602610
description hypothetical protein
nr
ID XP_012073520.1
description PREDICTED: myosin heavy chain, non-muscle [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067KP24
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_07999 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_40000: 185602-190134 , PASA_asmbl_40001: 185602-189115 , PASA_asmbl_40002: 187746-188003
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_004032_180 0.0 - - PREDICTED: myosin heavy chain, non-muscle [Jatropha curcas]
2 Hb_000865_080 0.0844037802 - - arsenite-resistance protein, putative [Ricinus communis]
3 Hb_002163_010 0.0848523626 - - PREDICTED: UBA and UBX domain-containing protein At4g15410 [Jatropha curcas]
4 Hb_017075_030 0.0849309975 - - helicase, putative [Ricinus communis]
5 Hb_000034_160 0.0855642425 - - hypothetical protein EUGRSUZ_F02151 [Eucalyptus grandis]
6 Hb_030565_090 0.0880592422 - - PREDICTED: DNA repair protein RAD50 [Jatropha curcas]
7 Hb_001454_320 0.0882705808 - - PREDICTED: protein pleiotropic regulatory locus 1 isoform X1 [Jatropha curcas]
8 Hb_000363_130 0.0887429271 - - PREDICTED: FRIGIDA-like protein 1 [Jatropha curcas]
9 Hb_033883_060 0.089112657 - - PREDICTED: uncharacterized protein LOC105648353 [Jatropha curcas]
10 Hb_007403_050 0.0909448904 - - PREDICTED: protein YIPF5 homolog [Jatropha curcas]
11 Hb_000300_360 0.0914777964 - - PREDICTED: exosome component 10 [Jatropha curcas]
12 Hb_001633_040 0.0919106951 - - PREDICTED: protein AUXIN SIGNALING F-BOX 2-like [Jatropha curcas]
13 Hb_000418_140 0.0919730478 - - PREDICTED: DNA damage-binding protein 1a [Jatropha curcas]
14 Hb_000594_040 0.092163697 - - hypothetical protein L484_013922 [Morus notabilis]
15 Hb_000215_190 0.0922427936 - - PREDICTED: glucan endo-1,3-beta-glucosidase 13-like [Jatropha curcas]
16 Hb_003935_030 0.0939634141 - - PREDICTED: 14-3-3-like protein GF14 kappa isoform X2 [Jatropha curcas]
17 Hb_001492_010 0.0951168741 - - PREDICTED: diacylglycerol kinase 3-like isoform X2 [Populus euphratica]
18 Hb_001059_100 0.0954097763 - - PREDICTED: heterogeneous nuclear ribonucleoprotein U-like protein 1 [Jatropha curcas]
19 Hb_000098_130 0.0963383946 - - PREDICTED: serine/threonine-protein kinase SRK2A [Jatropha curcas]
20 Hb_003299_070 0.0970151251 - - AMP deaminase [Theobroma cacao]

Gene co-expression network

sample Hb_004032_180 Hb_004032_180 Hb_000865_080 Hb_000865_080 Hb_004032_180--Hb_000865_080 Hb_002163_010 Hb_002163_010 Hb_004032_180--Hb_002163_010 Hb_017075_030 Hb_017075_030 Hb_004032_180--Hb_017075_030 Hb_000034_160 Hb_000034_160 Hb_004032_180--Hb_000034_160 Hb_030565_090 Hb_030565_090 Hb_004032_180--Hb_030565_090 Hb_001454_320 Hb_001454_320 Hb_004032_180--Hb_001454_320 Hb_000291_190 Hb_000291_190 Hb_000865_080--Hb_000291_190 Hb_000224_060 Hb_000224_060 Hb_000865_080--Hb_000224_060 Hb_000363_130 Hb_000363_130 Hb_000865_080--Hb_000363_130 Hb_004970_150 Hb_004970_150 Hb_000865_080--Hb_004970_150 Hb_023827_040 Hb_023827_040 Hb_000865_080--Hb_023827_040 Hb_000025_360 Hb_000025_360 Hb_000865_080--Hb_000025_360 Hb_000594_040 Hb_000594_040 Hb_002163_010--Hb_000594_040 Hb_003299_070 Hb_003299_070 Hb_002163_010--Hb_003299_070 Hb_031042_070 Hb_031042_070 Hb_002163_010--Hb_031042_070 Hb_001633_040 Hb_001633_040 Hb_002163_010--Hb_001633_040 Hb_003935_030 Hb_003935_030 Hb_002163_010--Hb_003935_030 Hb_002163_010--Hb_001454_320 Hb_033883_060 Hb_033883_060 Hb_017075_030--Hb_033883_060 Hb_000406_240 Hb_000406_240 Hb_017075_030--Hb_000406_240 Hb_003106_150 Hb_003106_150 Hb_017075_030--Hb_003106_150 Hb_017075_030--Hb_031042_070 Hb_001946_300 Hb_001946_300 Hb_017075_030--Hb_001946_300 Hb_003878_140 Hb_003878_140 Hb_017075_030--Hb_003878_140 Hb_007403_050 Hb_007403_050 Hb_000034_160--Hb_007403_050 Hb_000283_130 Hb_000283_130 Hb_000034_160--Hb_000283_130 Hb_003373_040 Hb_003373_040 Hb_000034_160--Hb_003373_040 Hb_000457_050 Hb_000457_050 Hb_000034_160--Hb_000457_050 Hb_010738_010 Hb_010738_010 Hb_000034_160--Hb_010738_010 Hb_000997_030 Hb_000997_030 Hb_030565_090--Hb_000997_030 Hb_030565_090--Hb_000363_130 Hb_000264_100 Hb_000264_100 Hb_030565_090--Hb_000264_100 Hb_034243_020 Hb_034243_020 Hb_030565_090--Hb_034243_020 Hb_030565_090--Hb_033883_060 Hb_030565_090--Hb_031042_070 Hb_001492_010 Hb_001492_010 Hb_001454_320--Hb_001492_010 Hb_000648_100 Hb_000648_100 Hb_001454_320--Hb_000648_100 Hb_003124_130 Hb_003124_130 Hb_001454_320--Hb_003124_130 Hb_000160_290 Hb_000160_290 Hb_001454_320--Hb_000160_290 Hb_000796_190 Hb_000796_190 Hb_001454_320--Hb_000796_190 Hb_007558_120 Hb_007558_120 Hb_001454_320--Hb_007558_120
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
45.5518 57.2908 19.0909 18.0813 35.8323 51.5921
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
27.9754 12.1701 17.1772 27.881 9.92316

CAGE analysis