Hb_004032_190

Information

Type -
Description -
Location Contig4032: 190662-196558
Sequence    

Annotation

kegg
ID pmum:103332444
description probable cellulose synthase A catalytic subunit 3 [UDP-forming]
nr
ID XP_012073521.1
description PREDICTED: probable cellulose synthase A catalytic subunit 3 [UDP-forming] isoform X1 [Jatropha curcas]
swissprot
ID Q69V23
description Probable cellulose synthase A catalytic subunit 3 [UDP-forming] OS=Oryza sativa subsp. japonica GN=CESA3 PE=2 SV=1
trembl
ID A0A067KY23
description Cellulose synthase OS=Jatropha curcas GN=JCGZ_08000 PE=3 SV=1
Gene Ontology
ID GO:0016020
description probable cellulose synthase a catalytic subunit 3

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_40004: 190559-196504
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_004032_190 0.0 - - PREDICTED: probable cellulose synthase A catalytic subunit 3 [UDP-forming] isoform X1 [Jatropha curcas]
2 Hb_000364_090 0.0521114161 - - PREDICTED: filament-like plant protein 7 isoform X2 [Jatropha curcas]
3 Hb_016277_030 0.073769006 - - hypothetical protein JCGZ_16973 [Jatropha curcas]
4 Hb_001206_100 0.0740405847 - - hypothetical protein PRUPE_ppa021915mg, partial [Prunus persica]
5 Hb_009421_070 0.0748692726 - - PREDICTED: cell number regulator 1-like [Jatropha curcas]
6 Hb_004466_090 0.084065282 - - conserved hypothetical protein [Ricinus communis]
7 Hb_000784_060 0.0894731667 - - conserved hypothetical protein [Ricinus communis]
8 Hb_000417_210 0.0929542595 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
9 Hb_001289_070 0.093346125 - - PREDICTED: protein YLS9-like [Jatropha curcas]
10 Hb_004374_030 0.094353379 - - PREDICTED: probable polygalacturonase [Jatropha curcas]
11 Hb_005842_010 0.0951964411 - - nitrate transporter, putative [Ricinus communis]
12 Hb_001512_130 0.0969278915 - - PREDICTED: uncharacterized protein LOC105633633 [Jatropha curcas]
13 Hb_000103_130 0.0993261444 - - PREDICTED: protein NETWORKED 1A [Jatropha curcas]
14 Hb_000005_010 0.0995716285 - - PREDICTED: serine carboxypeptidase-like 51 [Jatropha curcas]
15 Hb_005183_050 0.0998143494 - - hypothetical protein RCOM_1590900 [Ricinus communis]
16 Hb_002119_110 0.1000583539 - - PREDICTED: probable xyloglucan endotransglucosylase/hydrolase protein 28 [Jatropha curcas]
17 Hb_007163_110 0.1026097237 - - PREDICTED: kinesin-like protein KIF19 [Jatropha curcas]
18 Hb_001296_060 0.1030482336 - - Leucoanthocyanidin dioxygenase, putative [Ricinus communis]
19 Hb_005183_100 0.1032355216 - - hypothetical protein CICLE_v10002898mg [Citrus clementina]
20 Hb_001268_150 0.1036289727 transcription factor TF Family: NAC transcription factor, putative [Ricinus communis]

Gene co-expression network

sample Hb_004032_190 Hb_004032_190 Hb_000364_090 Hb_000364_090 Hb_004032_190--Hb_000364_090 Hb_016277_030 Hb_016277_030 Hb_004032_190--Hb_016277_030 Hb_001206_100 Hb_001206_100 Hb_004032_190--Hb_001206_100 Hb_009421_070 Hb_009421_070 Hb_004032_190--Hb_009421_070 Hb_004466_090 Hb_004466_090 Hb_004032_190--Hb_004466_090 Hb_000784_060 Hb_000784_060 Hb_004032_190--Hb_000784_060 Hb_000417_210 Hb_000417_210 Hb_000364_090--Hb_000417_210 Hb_000676_230 Hb_000676_230 Hb_000364_090--Hb_000676_230 Hb_133974_010 Hb_133974_010 Hb_000364_090--Hb_133974_010 Hb_001289_070 Hb_001289_070 Hb_000364_090--Hb_001289_070 Hb_005711_030 Hb_005711_030 Hb_000364_090--Hb_005711_030 Hb_004374_030 Hb_004374_030 Hb_016277_030--Hb_004374_030 Hb_016277_030--Hb_004466_090 Hb_005183_100 Hb_005183_100 Hb_016277_030--Hb_005183_100 Hb_016277_030--Hb_001206_100 Hb_016277_030--Hb_000784_060 Hb_001206_100--Hb_005183_100 Hb_001206_100--Hb_009421_070 Hb_002942_200 Hb_002942_200 Hb_001206_100--Hb_002942_200 Hb_009522_020 Hb_009522_020 Hb_001206_100--Hb_009522_020 Hb_000665_210 Hb_000665_210 Hb_009421_070--Hb_000665_210 Hb_001098_040 Hb_001098_040 Hb_009421_070--Hb_001098_040 Hb_009421_070--Hb_000784_060 Hb_005842_010 Hb_005842_010 Hb_009421_070--Hb_005842_010 Hb_004466_090--Hb_004374_030 Hb_004466_090--Hb_000784_060 Hb_002518_230 Hb_002518_230 Hb_004466_090--Hb_002518_230 Hb_000152_570 Hb_000152_570 Hb_004466_090--Hb_000152_570 Hb_000784_060--Hb_000665_210 Hb_001369_390 Hb_001369_390 Hb_000784_060--Hb_001369_390 Hb_000784_060--Hb_004374_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0146939 4.97869 12.7426 37.7908 0.0471026 0.0522837
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0221924 0.139717 0.0167664 4.07124 35.2254

CAGE analysis