Hb_004032_210

Information

Type -
Description -
Location Contig4032: 212757-218728
Sequence    

Annotation

kegg
ID rcu:RCOM_1602580
description hypothetical protein
nr
ID XP_002510760.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID Q9SRE5
description Uncharacterized protein At1g76660 OS=Arabidopsis thaliana GN=At1g76660 PE=2 SV=1
trembl
ID B9R8W7
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1602580 PE=4 SV=1
Gene Ontology
ID GO:0005886
description conserved hypothetical protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_40011: 214575-218780 , PASA_asmbl_40012: 217331-218715 , PASA_asmbl_40013: 215653-216202 , PASA_asmbl_40014: 214987-215108
cDNA
(Sanger)
(ID:Location)		 003_F09.ab1: 214596-216702 , 010_I14.ab1: 214596-216520

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_004032_210 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_003929_180 0.0773060665 - - PREDICTED: probable sugar phosphate/phosphate translocator At3g17430 isoform X1 [Glycine max]
3 Hb_004223_140 0.0828092508 - - endo-1,4-beta-glucanase, putative [Ricinus communis]
4 Hb_001545_130 0.0984217505 - - sur2 hydroxylase/desaturase, putative [Ricinus communis]
5 Hb_006351_020 0.1002659922 - - PREDICTED: L-type lectin-domain containing receptor kinase S.4-like [Jatropha curcas]
6 Hb_000003_030 0.1018278102 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
7 Hb_019654_060 0.1067716083 - - PREDICTED: rop guanine nucleotide exchange factor 1-like isoform X1 [Jatropha curcas]
8 Hb_011214_110 0.1104444669 - - PREDICTED: ALA-interacting subunit 3-like [Jatropha curcas]
9 Hb_004218_130 0.115549924 - - PREDICTED: uridine 5'-monophosphate synthase [Jatropha curcas]
10 Hb_000581_030 0.1159282454 - - conserved hypothetical protein [Ricinus communis]
11 Hb_000152_190 0.118780318 - - PREDICTED: K(+) efflux antiporter 5 [Jatropha curcas]
12 Hb_008725_270 0.1198757003 - - PREDICTED: probable protein disulfide-isomerase A6 [Jatropha curcas]
13 Hb_000000_330 0.1206954414 - - PREDICTED: uncharacterized protein LOC105633747 [Jatropha curcas]
14 Hb_018845_010 0.1223654443 - - PREDICTED: uncharacterized protein LOC105642055 [Jatropha curcas]
15 Hb_001616_070 0.1226281083 - - PREDICTED: uncharacterized protein LOC105644365 [Jatropha curcas]
16 Hb_002028_190 0.1244738216 - - PREDICTED: 26S protease regulatory subunit 7-like [Jatropha curcas]
17 Hb_000012_080 0.1254217883 - - PREDICTED: clathrin interactor EPSIN 1 [Jatropha curcas]
18 Hb_000009_060 0.1275688703 - - PREDICTED: dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit 1B [Jatropha curcas]
19 Hb_008025_010 0.1283362663 - - PREDICTED: lysosomal beta glucosidase-like [Musa acuminata subsp. malaccensis]
20 Hb_005074_040 0.1284136062 - - ATP binding protein, putative [Ricinus communis]

Gene co-expression network

sample Hb_004032_210 Hb_004032_210 Hb_003929_180 Hb_003929_180 Hb_004032_210--Hb_003929_180 Hb_004223_140 Hb_004223_140 Hb_004032_210--Hb_004223_140 Hb_001545_130 Hb_001545_130 Hb_004032_210--Hb_001545_130 Hb_006351_020 Hb_006351_020 Hb_004032_210--Hb_006351_020 Hb_000003_030 Hb_000003_030 Hb_004032_210--Hb_000003_030 Hb_019654_060 Hb_019654_060 Hb_004032_210--Hb_019654_060 Hb_008725_270 Hb_008725_270 Hb_003929_180--Hb_008725_270 Hb_003929_180--Hb_004223_140 Hb_004218_130 Hb_004218_130 Hb_003929_180--Hb_004218_130 Hb_000012_080 Hb_000012_080 Hb_003929_180--Hb_000012_080 Hb_003929_180--Hb_006351_020 Hb_002028_190 Hb_002028_190 Hb_004223_140--Hb_002028_190 Hb_018845_010 Hb_018845_010 Hb_004223_140--Hb_018845_010 Hb_004223_140--Hb_000012_080 Hb_004223_140--Hb_006351_020 Hb_001545_130--Hb_004218_130 Hb_147245_010 Hb_147245_010 Hb_001545_130--Hb_147245_010 Hb_001545_130--Hb_000003_030 Hb_004109_050 Hb_004109_050 Hb_001545_130--Hb_004109_050 Hb_001545_130--Hb_006351_020 Hb_001119_070 Hb_001119_070 Hb_006351_020--Hb_001119_070 Hb_000152_190 Hb_000152_190 Hb_006351_020--Hb_000152_190 Hb_000003_030--Hb_019654_060 Hb_003430_080 Hb_003430_080 Hb_000003_030--Hb_003430_080 Hb_000581_030 Hb_000581_030 Hb_000003_030--Hb_000581_030 Hb_000000_330 Hb_000000_330 Hb_000003_030--Hb_000000_330 Hb_011214_110 Hb_011214_110 Hb_019654_060--Hb_011214_110 Hb_019654_060--Hb_000581_030 Hb_002942_230 Hb_002942_230 Hb_019654_060--Hb_002942_230 Hb_008025_010 Hb_008025_010 Hb_019654_060--Hb_008025_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.0022 1.74759 9.17767 12.8804 1.50968 1.9183
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.99169 1.38489 2.17558 5.56894 4.50256

CAGE analysis