Hb_004032_230

Information

Type -
Description -
Location Contig4032: 224258-240069
Sequence    

Annotation

kegg
ID rcu:RCOM_1602530
description o-linked n-acetylglucosamine transferase, ogt, putative
nr
ID XP_012073532.1
description PREDICTED: uncharacterized protein LOC105635143 [Jatropha curcas]
swissprot
ID F4I3Z5
description Tetratricopeptide repeat protein SKI3 OS=Arabidopsis thaliana GN=SKI3 PE=1 SV=1
trembl
ID B9R8W2
description O-linked n-acetylglucosamine transferase, ogt, putative OS=Ricinus communis GN=RCOM_1602530 PE=4 SV=1
Gene Ontology
ID GO:0005515
description tetratricopeptide repeat protein 37

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_40019: 224670-226206 , PASA_asmbl_40020: 226661-227180 , PASA_asmbl_40022: 228607-228929 , PASA_asmbl_40023: 229332-230201 , PASA_asmbl_40024: 232889-233897 , PASA_asmbl_40025: 233960-239350 , PASA_asmbl_40026: 239463-240066
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_004032_230 0.0 - - PREDICTED: uncharacterized protein LOC105635143 [Jatropha curcas]
2 Hb_001534_210 0.0500766393 transcription factor TF Family: PHD PREDICTED: uncharacterized protein LOC105642316 isoform X2 [Jatropha curcas]
3 Hb_000264_070 0.0609743315 - - PREDICTED: uncharacterized protein LOC105649513 [Jatropha curcas]
4 Hb_102438_030 0.0633157254 transcription factor TF Family: C3H PREDICTED: zinc finger CCCH domain-containing protein 37-like isoform X1 [Jatropha curcas]
5 Hb_000102_050 0.0642304104 transcription factor TF Family: RB conserved hypothetical protein [Ricinus communis]
6 Hb_001231_090 0.0642388698 - - PREDICTED: CCR4-NOT transcription complex subunit 10 isoform X1 [Jatropha curcas]
7 Hb_003849_140 0.0687966786 - - PREDICTED: uncharacterized protein LOC105644697 [Jatropha curcas]
8 Hb_000723_110 0.0708570278 - - PREDICTED: TSL-kinase interacting protein 1 [Jatropha curcas]
9 Hb_007017_070 0.0717739739 - - PREDICTED: phospholipid-transporting ATPase 3 isoform X1 [Jatropha curcas]
10 Hb_000189_630 0.0720451962 - - PREDICTED: serine/threonine-protein kinase EDR1 [Jatropha curcas]
11 Hb_001021_200 0.0728826117 desease resistance Gene Name: AAA PREDICTED: peroxisome biogenesis protein 6 [Jatropha curcas]
12 Hb_008165_030 0.0729002303 - - PREDICTED: uncharacterized protein LOC105641288 [Jatropha curcas]
13 Hb_012565_050 0.0734187108 - - PREDICTED: U1 small nuclear ribonucleoprotein 70 kDa [Jatropha curcas]
14 Hb_000949_020 0.0737335399 transcription factor TF Family: Orphans PREDICTED: ethylene receptor isoform X2 [Jatropha curcas]
15 Hb_023226_070 0.0751742031 - - conserved hypothetical protein [Ricinus communis]
16 Hb_004976_010 0.0753219826 - - hypothetical protein RCOM_1429110 [Ricinus communis]
17 Hb_002542_130 0.0754242836 transcription factor TF Family: HB Homeobox protein LUMINIDEPENDENS, putative [Ricinus communis]
18 Hb_004410_070 0.0759589954 - - PREDICTED: protein LTV1 homolog [Jatropha curcas]
19 Hb_007426_060 0.0771033306 desease resistance Gene Name: NB-ARC unnamed protein product [Coffea canephora]
20 Hb_007818_030 0.0771106194 - - PREDICTED: transcriptional corepressor SEUSS-like [Jatropha curcas]

Gene co-expression network

sample Hb_004032_230 Hb_004032_230 Hb_001534_210 Hb_001534_210 Hb_004032_230--Hb_001534_210 Hb_000264_070 Hb_000264_070 Hb_004032_230--Hb_000264_070 Hb_102438_030 Hb_102438_030 Hb_004032_230--Hb_102438_030 Hb_000102_050 Hb_000102_050 Hb_004032_230--Hb_000102_050 Hb_001231_090 Hb_001231_090 Hb_004032_230--Hb_001231_090 Hb_003849_140 Hb_003849_140 Hb_004032_230--Hb_003849_140 Hb_007426_060 Hb_007426_060 Hb_001534_210--Hb_007426_060 Hb_001534_210--Hb_003849_140 Hb_000099_040 Hb_000099_040 Hb_001534_210--Hb_000099_040 Hb_001534_210--Hb_001231_090 Hb_009302_030 Hb_009302_030 Hb_001534_210--Hb_009302_030 Hb_002477_250 Hb_002477_250 Hb_000264_070--Hb_002477_250 Hb_000023_320 Hb_000023_320 Hb_000264_070--Hb_000023_320 Hb_001405_190 Hb_001405_190 Hb_000264_070--Hb_001405_190 Hb_000264_070--Hb_001231_090 Hb_000264_070--Hb_102438_030 Hb_030545_030 Hb_030545_030 Hb_102438_030--Hb_030545_030 Hb_102438_030--Hb_000102_050 Hb_007017_070 Hb_007017_070 Hb_102438_030--Hb_007017_070 Hb_000958_150 Hb_000958_150 Hb_102438_030--Hb_000958_150 Hb_000139_320 Hb_000139_320 Hb_102438_030--Hb_000139_320 Hb_000340_030 Hb_000340_030 Hb_000102_050--Hb_000340_030 Hb_000529_060 Hb_000529_060 Hb_000102_050--Hb_000529_060 Hb_005333_140 Hb_005333_140 Hb_000102_050--Hb_005333_140 Hb_000302_170 Hb_000302_170 Hb_000102_050--Hb_000302_170 Hb_002542_130 Hb_002542_130 Hb_001231_090--Hb_002542_130 Hb_002282_060 Hb_002282_060 Hb_001231_090--Hb_002282_060 Hb_004976_010 Hb_004976_010 Hb_001231_090--Hb_004976_010 Hb_005523_020 Hb_005523_020 Hb_001231_090--Hb_005523_020 Hb_000915_060 Hb_000915_060 Hb_003849_140--Hb_000915_060 Hb_000723_110 Hb_000723_110 Hb_003849_140--Hb_000723_110 Hb_026980_020 Hb_026980_020 Hb_003849_140--Hb_026980_020 Hb_000500_300 Hb_000500_300 Hb_003849_140--Hb_000500_300
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
4.92441 11.5685 9.23803 4.85111 7.53739 6.04545
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
2.4654 3.21137 3.45405 5.31589 5.59284

CAGE analysis