Hb_004032_240

Information

Type -
Description -
Location Contig4032: 240988-248444
Sequence    

Annotation

kegg
ID rcu:RCOM_1602510
description electron transporter, putative
nr
ID XP_002510753.1
description electron transporter, putative [Ricinus communis]
swissprot
ID -
description -
trembl
ID B9R8W0
description Electron transporter, putative OS=Ricinus communis GN=RCOM_1602510 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_40027: 243820-244179 , PASA_asmbl_40028: 242075-244385 , PASA_asmbl_40030: 246725-247120 , PASA_asmbl_40031: 245161-247676 , PASA_asmbl_40032: 246381-247784
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_004032_240 0.0 - - electron transporter, putative [Ricinus communis]
2 Hb_000958_010 0.1216001341 - - conserved hypothetical protein [Ricinus communis]
3 Hb_010931_110 0.1222111113 - - ubiquitin-protein ligase, putative [Ricinus communis]
4 Hb_003893_170 0.1428655728 - - hypothetical protein JCGZ_26423 [Jatropha curcas]
5 Hb_008453_020 0.1474216989 - - PREDICTED: E3 ubiquitin-protein ligase ATL23 [Jatropha curcas]
6 Hb_019153_040 0.1507921768 rubber biosynthesis Gene Name: 1-deoxy-D-xylulose-5-phosphate synthase putative 1-deoxy-D-xylulose 5-phosphate synthase [Hevea brasiliensis]
7 Hb_186982_030 0.151272825 - - conserved hypothetical protein [Ricinus communis]
8 Hb_002818_100 0.1526324429 - - hypothetical protein JCGZ_14122 [Jatropha curcas]
9 Hb_143629_050 0.1531257899 - - conserved hypothetical protein [Ricinus communis]
10 Hb_015456_020 0.1557968443 - - -
11 Hb_002200_110 0.1563003522 - - conserved hypothetical protein [Ricinus communis]
12 Hb_017134_040 0.1568430169 - - hypothetical protein AALP_AA3G042000 [Arabis alpina]
13 Hb_006452_060 0.1600709272 - - transferase, transferring glycosyl groups, putative [Ricinus communis]
14 Hb_128548_020 0.1602856172 - - PREDICTED: transmembrane protein 56-like [Jatropha curcas]
15 Hb_001341_040 0.1607443408 - - hypothetical protein JCGZ_05578 [Jatropha curcas]
16 Hb_001198_090 0.1630973878 - - PREDICTED: uncharacterized protein LOC105633343 [Jatropha curcas]
17 Hb_003751_110 0.1635291338 - - unknown [Lotus japonicus]
18 Hb_000329_610 0.1639162595 - - conserved hypothetical protein [Ricinus communis]
19 Hb_001115_050 0.1653476884 desease resistance Gene Name: NB-ARC PREDICTED: putative disease resistance protein RGA4 [Jatropha curcas]
20 Hb_001628_110 0.1656180659 - - PREDICTED: synaptotagmin-2 [Jatropha curcas]

Gene co-expression network

sample Hb_004032_240 Hb_004032_240 Hb_000958_010 Hb_000958_010 Hb_004032_240--Hb_000958_010 Hb_010931_110 Hb_010931_110 Hb_004032_240--Hb_010931_110 Hb_003893_170 Hb_003893_170 Hb_004032_240--Hb_003893_170 Hb_008453_020 Hb_008453_020 Hb_004032_240--Hb_008453_020 Hb_019153_040 Hb_019153_040 Hb_004032_240--Hb_019153_040 Hb_186982_030 Hb_186982_030 Hb_004032_240--Hb_186982_030 Hb_000958_010--Hb_008453_020 Hb_001514_200 Hb_001514_200 Hb_000958_010--Hb_001514_200 Hb_000117_040 Hb_000117_040 Hb_000958_010--Hb_000117_040 Hb_011609_190 Hb_011609_190 Hb_000958_010--Hb_011609_190 Hb_002200_110 Hb_002200_110 Hb_000958_010--Hb_002200_110 Hb_130177_010 Hb_130177_010 Hb_010931_110--Hb_130177_010 Hb_001198_090 Hb_001198_090 Hb_010931_110--Hb_001198_090 Hb_143629_050 Hb_143629_050 Hb_010931_110--Hb_143629_050 Hb_000987_050 Hb_000987_050 Hb_010931_110--Hb_000987_050 Hb_053543_010 Hb_053543_010 Hb_010931_110--Hb_053543_010 Hb_008453_060 Hb_008453_060 Hb_003893_170--Hb_008453_060 Hb_003751_110 Hb_003751_110 Hb_003893_170--Hb_003751_110 Hb_001439_120 Hb_001439_120 Hb_003893_170--Hb_001439_120 Hb_000733_060 Hb_000733_060 Hb_003893_170--Hb_000733_060 Hb_003893_170--Hb_008453_020 Hb_008453_020--Hb_001198_090 Hb_005015_010 Hb_005015_010 Hb_008453_020--Hb_005015_010 Hb_030620_010 Hb_030620_010 Hb_008453_020--Hb_030620_010 Hb_008453_020--Hb_000117_040 Hb_008453_020--Hb_000733_060 Hb_164732_010 Hb_164732_010 Hb_019153_040--Hb_164732_010 Hb_002983_020 Hb_002983_020 Hb_019153_040--Hb_002983_020 Hb_009680_030 Hb_009680_030 Hb_019153_040--Hb_009680_030 Hb_019153_040--Hb_010931_110 Hb_008376_010 Hb_008376_010 Hb_019153_040--Hb_008376_010 Hb_005063_010 Hb_005063_010 Hb_186982_030--Hb_005063_010 Hb_186982_030--Hb_000958_010 Hb_000101_170 Hb_000101_170 Hb_186982_030--Hb_000101_170 Hb_186982_030--Hb_002200_110 Hb_001911_030 Hb_001911_030 Hb_186982_030--Hb_001911_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
40.1511 2.9789 2.08525 4.39919 118.827 36.8518
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
41.7738 39.1665 33.2508 10.4156 1.11083

CAGE analysis