Hb_004032_260

Information

Type -
Description -
Location Contig4032: 275764-276378
Sequence    

Annotation

kegg
ID rcu:RCOM_1602490
description hypothetical protein
nr
ID XP_012073536.1
description PREDICTED: uncharacterized protein LOC105635147 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067KY31
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_08010 PE=4 SV=1
Gene Ontology
ID GO:0005634
description poly polymerase

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_40034: 275603-276596
cDNA
(Sanger)
(ID:Location)		 015_D10.ab1: 275885-276591

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_004032_260 0.0 - - PREDICTED: uncharacterized protein LOC105635147 [Jatropha curcas]
2 Hb_002046_070 0.1703971706 transcription factor TF Family: AUX/IAA PREDICTED: auxin-induced protein 22D-like isoform X1 [Populus euphratica]
3 Hb_001369_450 0.174200848 - - trehalose-6-phosphate synthase, putative [Ricinus communis]
4 Hb_012053_060 0.1841721362 - - PREDICTED: BTB/POZ domain-containing protein At3g44820 isoform X2 [Jatropha curcas]
5 Hb_012545_050 0.1913630153 - - PREDICTED: serine carboxypeptidase II-3-like [Jatropha curcas]
6 Hb_017434_050 0.2032896976 - - PREDICTED: importin subunit beta-3-like [Jatropha curcas]
7 Hb_005224_010 0.2060169798 - - glycine-rich protein [Bruguiera gymnorhiza]
8 Hb_009314_010 0.2088885897 - - PREDICTED: putative nuclease HARBI1 [Jatropha curcas]
9 Hb_003913_080 0.2105139369 - - rpl27A [Hemiselmis andersenii]
10 Hb_000161_150 0.2121582177 - - PREDICTED: protein argonaute 2-like [Jatropha curcas]
11 Hb_006573_180 0.2121667841 transcription factor TF Family: WRKY hypothetical protein RCOM_1581940 [Ricinus communis]
12 Hb_000373_180 0.2155111481 transcription factor TF Family: Trihelix hypothetical protein JCGZ_25182 [Jatropha curcas]
13 Hb_036790_020 0.2187793656 - - PREDICTED: polyadenylate-binding protein 3 [Jatropha curcas]
14 Hb_000732_210 0.2199010488 - - hexose transporter 1 [Hevea brasiliensis]
15 Hb_002067_140 0.2208871679 - - -
16 Hb_003972_080 0.2218647627 - - PREDICTED: probable 6-phosphogluconolactonase 1 [Jatropha curcas]
17 Hb_001776_170 0.2223306935 - - conserved hypothetical protein [Ricinus communis]
18 Hb_001159_080 0.2233540407 - - hypothetical protein JCGZ_20745 [Jatropha curcas]
19 Hb_005489_100 0.2243549827 - - conserved hypothetical protein [Ricinus communis]
20 Hb_011316_060 0.2261495012 - - alpha-l-fucosidase, putative [Ricinus communis]

Gene co-expression network

sample Hb_004032_260 Hb_004032_260 Hb_002046_070 Hb_002046_070 Hb_004032_260--Hb_002046_070 Hb_001369_450 Hb_001369_450 Hb_004032_260--Hb_001369_450 Hb_012053_060 Hb_012053_060 Hb_004032_260--Hb_012053_060 Hb_012545_050 Hb_012545_050 Hb_004032_260--Hb_012545_050 Hb_017434_050 Hb_017434_050 Hb_004032_260--Hb_017434_050 Hb_005224_010 Hb_005224_010 Hb_004032_260--Hb_005224_010 Hb_002046_070--Hb_012053_060 Hb_006573_180 Hb_006573_180 Hb_002046_070--Hb_006573_180 Hb_023732_040 Hb_023732_040 Hb_002046_070--Hb_023732_040 Hb_000990_060 Hb_000990_060 Hb_002046_070--Hb_000990_060 Hb_000077_060 Hb_000077_060 Hb_002046_070--Hb_000077_060 Hb_001369_450--Hb_012545_050 Hb_002067_140 Hb_002067_140 Hb_001369_450--Hb_002067_140 Hb_001776_170 Hb_001776_170 Hb_001369_450--Hb_001776_170 Hb_002759_240 Hb_002759_240 Hb_001369_450--Hb_002759_240 Hb_001511_140 Hb_001511_140 Hb_001369_450--Hb_001511_140 Hb_000979_250 Hb_000979_250 Hb_001369_450--Hb_000979_250 Hb_000538_180 Hb_000538_180 Hb_012053_060--Hb_000538_180 Hb_001780_140 Hb_001780_140 Hb_012053_060--Hb_001780_140 Hb_117807_010 Hb_117807_010 Hb_012053_060--Hb_117807_010 Hb_000140_360 Hb_000140_360 Hb_012053_060--Hb_000140_360 Hb_001488_370 Hb_001488_370 Hb_012545_050--Hb_001488_370 Hb_000264_020 Hb_000264_020 Hb_012545_050--Hb_000264_020 Hb_001437_130 Hb_001437_130 Hb_012545_050--Hb_001437_130 Hb_000373_180 Hb_000373_180 Hb_012545_050--Hb_000373_180 Hb_000392_380 Hb_000392_380 Hb_012545_050--Hb_000392_380 Hb_000239_030 Hb_000239_030 Hb_012545_050--Hb_000239_030 Hb_001894_170 Hb_001894_170 Hb_017434_050--Hb_001894_170 Hb_006594_020 Hb_006594_020 Hb_017434_050--Hb_006594_020 Hb_017434_050--Hb_000373_180 Hb_000723_190 Hb_000723_190 Hb_017434_050--Hb_000723_190 Hb_004414_050 Hb_004414_050 Hb_017434_050--Hb_004414_050 Hb_009314_010 Hb_009314_010 Hb_017434_050--Hb_009314_010 Hb_000327_220 Hb_000327_220 Hb_005224_010--Hb_000327_220 Hb_002239_060 Hb_002239_060 Hb_005224_010--Hb_002239_060 Hb_001159_080 Hb_001159_080 Hb_005224_010--Hb_001159_080 Hb_005489_100 Hb_005489_100 Hb_005224_010--Hb_005489_100 Hb_003972_080 Hb_003972_080 Hb_005224_010--Hb_003972_080 Hb_005224_010--Hb_009314_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.64809 2.44737 0.864116 3.484 0.397002 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
4.18623 10.2531 16.7879 3.57205 0.297303

CAGE analysis