Hb_004032_280

Information

Type -
Description -
Location Contig4032: 288795-290731
Sequence    

Annotation

kegg
ID rcu:RCOM_1602470
description hypothetical protein
nr
ID XP_012073538.1
description PREDICTED: uncharacterized protein LOC105635149 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067KKI4
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_08012 PE=4 SV=1
Gene Ontology
ID GO:0005794
description PREDICTED: uncharacterized protein LOC105635149

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_40036: 288626-290706
cDNA
(Sanger)
(ID:Location)		 023_C15.ab1: 290260-290660 , 034_H12.ab1: 289989-290706 , 040_H10.ab1: 289897-290660

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_004032_280 0.0 - - PREDICTED: uncharacterized protein LOC105635149 [Jatropha curcas]
2 Hb_006831_090 0.0462719918 - - PREDICTED: uncharacterized protein LOC105642125 isoform X1 [Jatropha curcas]
3 Hb_000599_150 0.0549807432 - - PREDICTED: probable arabinose 5-phosphate isomerase [Jatropha curcas]
4 Hb_002600_170 0.0576083107 - - conserved hypothetical protein [Ricinus communis]
5 Hb_000329_780 0.0583916267 - - hypothetical protein POPTR_0403s00200g [Populus trichocarpa]
6 Hb_008536_020 0.0606287269 - - PREDICTED: probable E3 ubiquitin-protein ligase RHA2B [Jatropha curcas]
7 Hb_166718_010 0.0620111833 - - heat-shock protein, putative [Ricinus communis]
8 Hb_027472_060 0.0625778048 transcription factor TF Family: GRAS DELLA protein GAI1, putative [Ricinus communis]
9 Hb_000031_180 0.0626253521 - - sarcosine oxidase, putative [Ricinus communis]
10 Hb_002374_180 0.0749159434 - - PREDICTED: E3 ubiquitin ligase BIG BROTHER-related [Jatropha curcas]
11 Hb_002740_050 0.0802414824 transcription factor TF Family: MYB PREDICTED: transcription factor MYB86-like [Populus euphratica]
12 Hb_002572_040 0.0811576295 - - PREDICTED: uncharacterized protein LOC105635149 [Jatropha curcas]
13 Hb_003163_010 0.0812253632 - - hypothetical protein POPTR_0012s02920g [Populus trichocarpa]
14 Hb_172426_070 0.0834516997 - - PREDICTED: BAG family molecular chaperone regulator 3-like isoform X1 [Jatropha curcas]
15 Hb_005337_100 0.0840865989 - - PREDICTED: uncharacterized protein LOC105629349 [Jatropha curcas]
16 Hb_002119_100 0.0843392112 - - cytochrome B561, putative [Ricinus communis]
17 Hb_000803_080 0.0849055957 desease resistance Gene Name: ABC_tran ATP-binding cassette transporter, putative [Ricinus communis]
18 Hb_005532_030 0.0873634393 - - DNA binding protein, putative [Ricinus communis]
19 Hb_052530_020 0.088744627 - - cytochrome B5 isoform 1, putative [Ricinus communis]
20 Hb_000318_310 0.0895124867 - - hypothetical protein POPTR_0009s11190g [Populus trichocarpa]

Gene co-expression network

sample Hb_004032_280 Hb_004032_280 Hb_006831_090 Hb_006831_090 Hb_004032_280--Hb_006831_090 Hb_000599_150 Hb_000599_150 Hb_004032_280--Hb_000599_150 Hb_002600_170 Hb_002600_170 Hb_004032_280--Hb_002600_170 Hb_000329_780 Hb_000329_780 Hb_004032_280--Hb_000329_780 Hb_008536_020 Hb_008536_020 Hb_004032_280--Hb_008536_020 Hb_166718_010 Hb_166718_010 Hb_004032_280--Hb_166718_010 Hb_006831_090--Hb_000329_780 Hb_006831_090--Hb_002600_170 Hb_002374_180 Hb_002374_180 Hb_006831_090--Hb_002374_180 Hb_006831_090--Hb_008536_020 Hb_172426_070 Hb_172426_070 Hb_006831_090--Hb_172426_070 Hb_000031_180 Hb_000031_180 Hb_000599_150--Hb_000031_180 Hb_052530_020 Hb_052530_020 Hb_000599_150--Hb_052530_020 Hb_000599_150--Hb_000329_780 Hb_002572_040 Hb_002572_040 Hb_000599_150--Hb_002572_040 Hb_007483_090 Hb_007483_090 Hb_000599_150--Hb_007483_090 Hb_002600_170--Hb_002374_180 Hb_002600_170--Hb_008536_020 Hb_002600_170--Hb_000329_780 Hb_005532_030 Hb_005532_030 Hb_002600_170--Hb_005532_030 Hb_002119_100 Hb_002119_100 Hb_000329_780--Hb_002119_100 Hb_000329_780--Hb_002374_180 Hb_000329_780--Hb_008536_020 Hb_000329_780--Hb_000031_180 Hb_000520_040 Hb_000520_040 Hb_008536_020--Hb_000520_040 Hb_008536_020--Hb_002374_180 Hb_000803_080 Hb_000803_080 Hb_166718_010--Hb_000803_080 Hb_166718_010--Hb_008536_020 Hb_166718_010--Hb_002600_170 Hb_166718_010--Hb_006831_090 Hb_166718_010--Hb_000329_780
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0772154 2.33845 33.0085 42.7127 0.065568 0.0193182
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.175608 0.197383 0.149316 1.61923 54.2764

CAGE analysis