Hb_004032_310

Information

Type transcription factor
Description TF Family: SBP
Location Contig4032: 299834-306201
Sequence    

Annotation

kegg
ID rcu:RCOM_1602440
description Squamosa promoter-binding protein, putative
nr
ID XP_012073540.1
description PREDICTED: squamosa promoter-binding-like protein 14 [Jatropha curcas]
swissprot
ID Q8RY95
description Squamosa promoter-binding-like protein 14 OS=Arabidopsis thaliana GN=SPL14 PE=2 SV=3
trembl
ID A0A067KP35
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_08014 PE=4 SV=1
Gene Ontology
ID GO:0005634
description squamosa promoter-binding-like protein 14

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_40038: 299875-306126 , PASA_asmbl_40039: 302552-303427 , PASA_asmbl_40040: 299926-302416
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_004032_310 0.0 transcription factor TF Family: SBP PREDICTED: squamosa promoter-binding-like protein 14 [Jatropha curcas]
2 Hb_003752_120 0.0724352966 - - PREDICTED: probably inactive leucine-rich repeat receptor-like protein kinase At5g48380 isoform X1 [Jatropha curcas]
3 Hb_000448_060 0.0748659543 transcription factor TF Family: CAMTA PREDICTED: calmodulin-binding transcription activator 2 [Jatropha curcas]
4 Hb_001489_120 0.0883846699 - - PREDICTED: alpha-amylase 3, chloroplastic [Jatropha curcas]
5 Hb_001662_170 0.0898620128 - - PREDICTED: phospholipase D delta-like [Jatropha curcas]
6 Hb_004994_300 0.0997758071 - - synaptotagmin, putative [Ricinus communis]
7 Hb_002915_070 0.1005572698 - - PREDICTED: protein TRANSPARENT TESTA GLABRA 1 [Jatropha curcas]
8 Hb_001865_060 0.1009221756 - - PREDICTED: uncharacterized protein LOC105647962 [Jatropha curcas]
9 Hb_002154_020 0.1032168424 - - protein with unknown function [Ricinus communis]
10 Hb_000805_230 0.103918066 - - PREDICTED: oxysterol-binding protein-related protein 3C-like [Jatropha curcas]
11 Hb_012787_040 0.1050164154 - - PREDICTED: uncharacterized protein LOC105649794 isoform X2 [Jatropha curcas]
12 Hb_000803_060 0.1086713462 - - poly(p)/ATP NAD kinase, putative [Ricinus communis]
13 Hb_001053_200 0.1096338717 - - PREDICTED: putative disease resistance protein RGA4 [Jatropha curcas]
14 Hb_001258_150 0.1096762047 - - PREDICTED: COMPASS-like H3K4 histone methylase component WDR5A [Jatropha curcas]
15 Hb_002477_120 0.1104554032 - - PREDICTED: phospholipid:diacylglycerol acyltransferase 1-like [Jatropha curcas]
16 Hb_000071_140 0.1111115313 - - PREDICTED: uncharacterized protein LOC105628258 [Jatropha curcas]
17 Hb_004324_060 0.1138243144 - - Cyclic nucleotide-gated ion channel, putative [Ricinus communis]
18 Hb_007007_080 0.1145013012 - - conserved hypothetical protein [Ricinus communis]
19 Hb_011360_090 0.1218572029 - - PREDICTED: uncharacterized protein LOC105644141 [Jatropha curcas]
20 Hb_000270_230 0.1234511728 - - PREDICTED: probable beta-1,3-galactosyltransferase 19 [Jatropha curcas]

Gene co-expression network

sample Hb_004032_310 Hb_004032_310 Hb_003752_120 Hb_003752_120 Hb_004032_310--Hb_003752_120 Hb_000448_060 Hb_000448_060 Hb_004032_310--Hb_000448_060 Hb_001489_120 Hb_001489_120 Hb_004032_310--Hb_001489_120 Hb_001662_170 Hb_001662_170 Hb_004032_310--Hb_001662_170 Hb_004994_300 Hb_004994_300 Hb_004032_310--Hb_004994_300 Hb_002915_070 Hb_002915_070 Hb_004032_310--Hb_002915_070 Hb_012787_040 Hb_012787_040 Hb_003752_120--Hb_012787_040 Hb_003752_120--Hb_001662_170 Hb_003752_120--Hb_002915_070 Hb_000069_780 Hb_000069_780 Hb_003752_120--Hb_000069_780 Hb_103788_010 Hb_103788_010 Hb_003752_120--Hb_103788_010 Hb_000448_060--Hb_002915_070 Hb_000062_080 Hb_000062_080 Hb_000448_060--Hb_000062_080 Hb_002154_020 Hb_002154_020 Hb_000448_060--Hb_002154_020 Hb_001865_060 Hb_001865_060 Hb_000448_060--Hb_001865_060 Hb_000805_230 Hb_000805_230 Hb_000448_060--Hb_000805_230 Hb_000071_140 Hb_000071_140 Hb_001489_120--Hb_000071_140 Hb_001258_150 Hb_001258_150 Hb_001489_120--Hb_001258_150 Hb_000803_060 Hb_000803_060 Hb_001489_120--Hb_000803_060 Hb_002793_060 Hb_002793_060 Hb_001489_120--Hb_002793_060 Hb_006414_020 Hb_006414_020 Hb_001489_120--Hb_006414_020 Hb_004106_010 Hb_004106_010 Hb_001662_170--Hb_004106_010 Hb_001662_170--Hb_012787_040 Hb_001053_200 Hb_001053_200 Hb_001662_170--Hb_001053_200 Hb_011360_090 Hb_011360_090 Hb_001662_170--Hb_011360_090 Hb_003605_220 Hb_003605_220 Hb_004994_300--Hb_003605_220 Hb_007313_070 Hb_007313_070 Hb_004994_300--Hb_007313_070 Hb_000270_230 Hb_000270_230 Hb_004994_300--Hb_000270_230 Hb_172421_010 Hb_172421_010 Hb_004994_300--Hb_172421_010 Hb_004994_300--Hb_003752_120 Hb_002915_070--Hb_000805_230 Hb_000179_230 Hb_000179_230 Hb_002915_070--Hb_000179_230 Hb_002915_070--Hb_103788_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
16.8687 140.921 40.0713 34.1542 18.7271 16.8268
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
8.30086 9.02051 11.3 26.8599 24.7937

CAGE analysis