Hb_004032_360

Information

Type -
Description -
Location Contig4032: 340840-345000
Sequence    

Annotation

kegg
ID mdm:103403885
description uncharacterized LOC103403885
nr
ID XP_008340956.1
description PREDICTED: uncharacterized protein LOC103403885 [Malus domestica]
swissprot
ID P08548
description LINE-1 reverse transcriptase homolog OS=Nycticebus coucang PE=3 SV=1
trembl
ID M5VU98
description Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa022115mg PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_40050: 340030-340424 , PASA_asmbl_40051: 340455-340631
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_004032_360 0.0 - - PREDICTED: uncharacterized protein LOC103403885 [Malus domestica]
2 Hb_002256_030 0.064570003 - - conserved hypothetical protein [Ricinus communis]
3 Hb_000120_330 0.0910212139 - - conserved hypothetical protein [Ricinus communis]
4 Hb_027380_050 0.0965235564 - - PREDICTED: pentatricopeptide repeat-containing protein At1g11290-like [Jatropha curcas]
5 Hb_001246_110 0.0990213245 - - PREDICTED: probable purine permease 11 [Jatropha curcas]
6 Hb_000056_240 0.0995492174 - - PREDICTED: cullin-3A [Jatropha curcas]
7 Hb_001030_020 0.0997205031 - - Poly(A) polymerase alpha, putative [Ricinus communis]
8 Hb_036790_100 0.0999433166 - - PREDICTED: uncharacterized protein LOC105645120 [Jatropha curcas]
9 Hb_000866_220 0.1000943283 - - PREDICTED: uncharacterized protein LOC105642989 [Jatropha curcas]
10 Hb_007426_180 0.1002105598 - - PREDICTED: probable inositol transporter 2 [Jatropha curcas]
11 Hb_012019_010 0.1007173115 - - PREDICTED: F-box/kelch-repeat protein SKIP30 [Jatropha curcas]
12 Hb_005725_250 0.1011150848 - - PREDICTED: uncharacterized protein LOC105630805 isoform X1 [Jatropha curcas]
13 Hb_001245_100 0.1041762791 transcription factor TF Family: Alfin-like ATP synthase alpha subunit mitochondrial, putative [Ricinus communis]
14 Hb_001766_060 0.1042383027 - - conserved hypothetical protein [Ricinus communis]
15 Hb_000500_100 0.1045486556 - - peptide methionine sulfoxide reductase A1-like [Jatropha curcas]
16 Hb_001242_060 0.1056962292 - - PREDICTED: uncharacterized protein LOC105139508 [Populus euphratica]
17 Hb_002739_100 0.1058554251 transcription factor TF Family: FAR1 PREDICTED: protein FAR1-RELATED SEQUENCE 5 isoform X1 [Jatropha curcas]
18 Hb_000563_230 0.1066263668 - - phospholipase d zeta, putative [Ricinus communis]
19 Hb_001157_040 0.1067714594 - - casein kinase, putative [Ricinus communis]
20 Hb_003581_070 0.1072603258 - - PREDICTED: putative pentatricopeptide repeat-containing protein At5g40405 [Malus domestica]

Gene co-expression network

sample Hb_004032_360 Hb_004032_360 Hb_002256_030 Hb_002256_030 Hb_004032_360--Hb_002256_030 Hb_000120_330 Hb_000120_330 Hb_004032_360--Hb_000120_330 Hb_027380_050 Hb_027380_050 Hb_004032_360--Hb_027380_050 Hb_001246_110 Hb_001246_110 Hb_004032_360--Hb_001246_110 Hb_000056_240 Hb_000056_240 Hb_004032_360--Hb_000056_240 Hb_001030_020 Hb_001030_020 Hb_004032_360--Hb_001030_020 Hb_036790_100 Hb_036790_100 Hb_002256_030--Hb_036790_100 Hb_031527_040 Hb_031527_040 Hb_002256_030--Hb_031527_040 Hb_001552_020 Hb_001552_020 Hb_002256_030--Hb_001552_020 Hb_001242_060 Hb_001242_060 Hb_002256_030--Hb_001242_060 Hb_002739_100 Hb_002739_100 Hb_002256_030--Hb_002739_100 Hb_001437_080 Hb_001437_080 Hb_000120_330--Hb_001437_080 Hb_002813_040 Hb_002813_040 Hb_000120_330--Hb_002813_040 Hb_001143_130 Hb_001143_130 Hb_000120_330--Hb_001143_130 Hb_003125_200 Hb_003125_200 Hb_000120_330--Hb_003125_200 Hb_015279_010 Hb_015279_010 Hb_000120_330--Hb_015279_010 Hb_001245_100 Hb_001245_100 Hb_027380_050--Hb_001245_100 Hb_058999_020 Hb_058999_020 Hb_027380_050--Hb_058999_020 Hb_005779_060 Hb_005779_060 Hb_027380_050--Hb_005779_060 Hb_000684_470 Hb_000684_470 Hb_027380_050--Hb_000684_470 Hb_000152_500 Hb_000152_500 Hb_027380_050--Hb_000152_500 Hb_027380_050--Hb_001030_020 Hb_000164_020 Hb_000164_020 Hb_001246_110--Hb_000164_020 Hb_001766_060 Hb_001766_060 Hb_001246_110--Hb_001766_060 Hb_000729_030 Hb_000729_030 Hb_001246_110--Hb_000729_030 Hb_000869_080 Hb_000869_080 Hb_001246_110--Hb_000869_080 Hb_012019_010 Hb_012019_010 Hb_001246_110--Hb_012019_010 Hb_000342_060 Hb_000342_060 Hb_001246_110--Hb_000342_060 Hb_000866_220 Hb_000866_220 Hb_000056_240--Hb_000866_220 Hb_002391_310 Hb_002391_310 Hb_000056_240--Hb_002391_310 Hb_004374_070 Hb_004374_070 Hb_000056_240--Hb_004374_070 Hb_085863_030 Hb_085863_030 Hb_000056_240--Hb_085863_030 Hb_002046_180 Hb_002046_180 Hb_000056_240--Hb_002046_180 Hb_002110_150 Hb_002110_150 Hb_000056_240--Hb_002110_150 Hb_001470_030 Hb_001470_030 Hb_001030_020--Hb_001470_030 Hb_010423_030 Hb_010423_030 Hb_001030_020--Hb_010423_030 Hb_001030_020--Hb_001245_100 Hb_001163_050 Hb_001163_050 Hb_001030_020--Hb_001163_050 Hb_001157_040 Hb_001157_040 Hb_001030_020--Hb_001157_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.221824 0.196976 0.0853872 0.0982422 0.129129 0.117074
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.145583 0.286391 0.163697 0.0853122 0.121675

CAGE analysis