Hb_004032_380

Information

Type transcription factor
Description TF Family: FAR1
Location Contig4032: 356473-360482
Sequence    

Annotation

kegg
ID pper:PRUPE_ppa026999mg
description hypothetical protein
nr
ID XP_012073554.1
description PREDICTED: protein FAR1-RELATED SEQUENCE 5-like [Jatropha curcas]
swissprot
ID Q9SZL8
description Protein FAR1-RELATED SEQUENCE 5 OS=Arabidopsis thaliana GN=FRS5 PE=2 SV=1
trembl
ID A0A067KKW5
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_08023 PE=4 SV=1
Gene Ontology
ID GO:0008270
description protein far1-related sequence 5-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_40056: 357287-357913 , PASA_asmbl_40057: 358371-358771 , PASA_asmbl_40058: 358902-359964
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_004032_380 0.0 transcription factor TF Family: FAR1 PREDICTED: protein FAR1-RELATED SEQUENCE 5-like [Jatropha curcas]
2 Hb_002740_110 0.065765824 - - PREDICTED: phytochrome A [Jatropha curcas]
3 Hb_004143_130 0.0676680777 - - PREDICTED: BEACH domain-containing protein lvsC [Jatropha curcas]
4 Hb_010174_110 0.0699115572 - - hypothetical protein JCGZ_17880 [Jatropha curcas]
5 Hb_005901_020 0.071994214 - - PREDICTED: elongation factor Tu GTP-binding domain-containing protein 1 [Jatropha curcas]
6 Hb_003253_040 0.0740458761 - - PREDICTED: uncharacterized protein At5g41620 [Jatropha curcas]
7 Hb_000028_280 0.0755619919 transcription factor TF Family: NF-X1 PREDICTED: NF-X1-type zinc finger protein NFXL1 [Jatropha curcas]
8 Hb_000002_010 0.0789737984 - - PREDICTED: uncharacterized protein LOC105641567 [Jatropha curcas]
9 Hb_004117_310 0.0801054782 - - PREDICTED: uncharacterized protein LOC105648043 [Jatropha curcas]
10 Hb_006831_040 0.0890458077 - - PREDICTED: enhancer of mRNA-decapping protein 4-like isoform X1 [Jatropha curcas]
11 Hb_002942_100 0.0891825748 - - PREDICTED: pentatricopeptide repeat-containing protein At5g61990, mitochondrial [Jatropha curcas]
12 Hb_002701_040 0.0909912477 - - PREDICTED: auxin transport protein BIG [Jatropha curcas]
13 Hb_001913_060 0.0928943869 - - PREDICTED: splicing factor 3B subunit 3-like [Jatropha curcas]
14 Hb_001199_100 0.0931955648 - - PREDICTED: uncharacterized protein LOC105639813 [Jatropha curcas]
15 Hb_000890_050 0.0935276458 - - PREDICTED: uncharacterized protein LOC105631800 [Jatropha curcas]
16 Hb_000343_120 0.0944019609 - - PREDICTED: pentatricopeptide repeat-containing protein At3g16010 [Jatropha curcas]
17 Hb_007441_220 0.0945870677 - - PREDICTED: eukaryotic translation initiation factor 4G [Jatropha curcas]
18 Hb_004994_220 0.0947823174 - - PREDICTED: K(+) efflux antiporter 2, chloroplastic-like isoform X2 [Jatropha curcas]
19 Hb_000318_390 0.095184528 - - PREDICTED: uncharacterized protein LOC105631693 isoform X1 [Jatropha curcas]
20 Hb_004545_140 0.0951877927 - - hypothetical protein JCGZ_23405 [Jatropha curcas]

Gene co-expression network

sample Hb_004032_380 Hb_004032_380 Hb_002740_110 Hb_002740_110 Hb_004032_380--Hb_002740_110 Hb_004143_130 Hb_004143_130 Hb_004032_380--Hb_004143_130 Hb_010174_110 Hb_010174_110 Hb_004032_380--Hb_010174_110 Hb_005901_020 Hb_005901_020 Hb_004032_380--Hb_005901_020 Hb_003253_040 Hb_003253_040 Hb_004032_380--Hb_003253_040 Hb_000028_280 Hb_000028_280 Hb_004032_380--Hb_000028_280 Hb_002740_110--Hb_003253_040 Hb_002740_110--Hb_010174_110 Hb_002740_110--Hb_000028_280 Hb_004994_220 Hb_004994_220 Hb_002740_110--Hb_004994_220 Hb_002740_110--Hb_004143_130 Hb_004143_130--Hb_000028_280 Hb_002942_100 Hb_002942_100 Hb_004143_130--Hb_002942_100 Hb_004143_130--Hb_003253_040 Hb_004143_130--Hb_010174_110 Hb_010174_110--Hb_003253_040 Hb_000002_010 Hb_000002_010 Hb_010174_110--Hb_000002_010 Hb_000107_490 Hb_000107_490 Hb_010174_110--Hb_000107_490 Hb_010174_110--Hb_004994_220 Hb_001199_100 Hb_001199_100 Hb_005901_020--Hb_001199_100 Hb_001496_070 Hb_001496_070 Hb_005901_020--Hb_001496_070 Hb_005901_020--Hb_003253_040 Hb_001449_040 Hb_001449_040 Hb_005901_020--Hb_001449_040 Hb_003294_090 Hb_003294_090 Hb_005901_020--Hb_003294_090 Hb_003253_040--Hb_001199_100 Hb_003253_040--Hb_002942_100 Hb_002063_020 Hb_002063_020 Hb_003253_040--Hb_002063_020 Hb_000343_120 Hb_000343_120 Hb_000028_280--Hb_000343_120 Hb_003605_110 Hb_003605_110 Hb_000028_280--Hb_003605_110 Hb_000028_280--Hb_003253_040 Hb_000028_280--Hb_004994_220
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
3.22241 4.24158 0.628206 2.3934 3.32172 3.95345
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
2.38437 2.28098 4.4051 4.45235 3.58003

CAGE analysis