Hb_004032_390

Information

Type -
Description -
Location Contig4032: 361304-363735
Sequence    

Annotation

kegg
ID rcu:RCOM_1602240
description CDK, putative (EC:2.7.11.23)
nr
ID XP_002510736.1
description CDK, putative [Ricinus communis]
swissprot
ID Q8LG64
description Cyclin-dependent kinase B2-2 OS=Arabidopsis thaliana GN=CDKB2-2 PE=1 SV=2
trembl
ID B9R8U3
description CDK, putative OS=Ricinus communis GN=RCOM_1602240 PE=4 SV=1
Gene Ontology
ID GO:0004672
description cyclin-dependent kinase

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_40060: 361346-363803
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_004032_390 0.0 - - CDK, putative [Ricinus communis]
2 Hb_001220_020 0.0452206077 - - PREDICTED: probably inactive leucine-rich repeat receptor-like protein kinase IMK2 [Jatropha curcas]
3 Hb_003398_050 0.0497034337 - - B-type cell cycle switch protein ccs52B [Populus trichocarpa]
4 Hb_162378_020 0.0555741105 transcription factor TF Family: HMG PREDICTED: high mobility group B protein 13-like [Populus euphratica]
5 Hb_003776_050 0.0567434867 - - PREDICTED: uncharacterized protein LOC105641219 [Jatropha curcas]
6 Hb_002928_150 0.0578081941 - - PREDICTED: cyclin-B2-4-like [Jatropha curcas]
7 Hb_004174_030 0.0659301282 - - PREDICTED: probably inactive leucine-rich repeat receptor-like protein kinase IMK2 [Populus euphratica]
8 Hb_000614_200 0.0676416992 - - plant mitotic spindle assembly checkpoint protein mad2, putative [Ricinus communis]
9 Hb_000316_070 0.0676451125 - - PREDICTED: actin-1-like isoform X2 [Cucumis melo]
10 Hb_119044_040 0.068508863 - - cyclin B, putative [Ricinus communis]
11 Hb_011849_010 0.0688722156 - - PREDICTED: kinesin-like protein KIFC3 isoform X4 [Jatropha curcas]
12 Hb_002686_070 0.0696285938 - - conserved hypothetical protein [Ricinus communis]
13 Hb_080952_060 0.0716035111 - - PREDICTED: patellin-4 [Populus euphratica]
14 Hb_002473_030 0.0722782404 - - PREDICTED: osmotic avoidance abnormal protein 3 [Jatropha curcas]
15 Hb_003018_210 0.074379417 - - PREDICTED: uncharacterized protein LOC105138721 isoform X2 [Populus euphratica]
16 Hb_001969_120 0.0746630347 - - PREDICTED: plectin [Jatropha curcas]
17 Hb_001699_070 0.0764392224 - - conserved hypothetical protein [Ricinus communis]
18 Hb_005914_100 0.0784792422 - - conserved hypothetical protein [Ricinus communis]
19 Hb_004097_030 0.0791861043 - - PREDICTED: uncharacterized protein LOC105634518 [Jatropha curcas]
20 Hb_001998_180 0.0836927702 - - actin binding protein, putative [Ricinus communis]

Gene co-expression network

sample Hb_004032_390 Hb_004032_390 Hb_001220_020 Hb_001220_020 Hb_004032_390--Hb_001220_020 Hb_003398_050 Hb_003398_050 Hb_004032_390--Hb_003398_050 Hb_162378_020 Hb_162378_020 Hb_004032_390--Hb_162378_020 Hb_003776_050 Hb_003776_050 Hb_004032_390--Hb_003776_050 Hb_002928_150 Hb_002928_150 Hb_004032_390--Hb_002928_150 Hb_004174_030 Hb_004174_030 Hb_004032_390--Hb_004174_030 Hb_001220_020--Hb_003398_050 Hb_001220_020--Hb_162378_020 Hb_001220_020--Hb_004174_030 Hb_001220_020--Hb_002928_150 Hb_001235_040 Hb_001235_040 Hb_001220_020--Hb_001235_040 Hb_003398_050--Hb_002928_150 Hb_003398_050--Hb_003776_050 Hb_003398_050--Hb_004174_030 Hb_005914_100 Hb_005914_100 Hb_003398_050--Hb_005914_100 Hb_011063_030 Hb_011063_030 Hb_162378_020--Hb_011063_030 Hb_000032_080 Hb_000032_080 Hb_162378_020--Hb_000032_080 Hb_064396_010 Hb_064396_010 Hb_162378_020--Hb_064396_010 Hb_002686_070 Hb_002686_070 Hb_162378_020--Hb_002686_070 Hb_001969_120 Hb_001969_120 Hb_003776_050--Hb_001969_120 Hb_119044_040 Hb_119044_040 Hb_003776_050--Hb_119044_040 Hb_000614_200 Hb_000614_200 Hb_003776_050--Hb_000614_200 Hb_003776_050--Hb_002928_150 Hb_000060_030 Hb_000060_030 Hb_003776_050--Hb_000060_030 Hb_002928_150--Hb_005914_100 Hb_004097_030 Hb_004097_030 Hb_002928_150--Hb_004097_030 Hb_002928_150--Hb_004174_030 Hb_004174_030--Hb_004097_030 Hb_003018_210 Hb_003018_210 Hb_004174_030--Hb_003018_210 Hb_004174_030--Hb_005914_100
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.17813 1.08629 89.3859 28.5347 0.0697328 0.160742
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.250671 0.164315 0 4.99168 3.19211

CAGE analysis