Hb_004032_430

Information

Type -
Description -
Location Contig4032: 389945-390989
Sequence    

Annotation

kegg
ID rcu:RCOM_1602210
description hypothetical protein
nr
ID XP_012073563.1
description PREDICTED: uncharacterized protein LOC105635169 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067KP46
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_08029 PE=4 SV=1
Gene Ontology
ID GO:0005739
description subtilisin-like protease 3

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_40067: 391768-394651 , PASA_asmbl_40068: 376998-394651 , PASA_asmbl_40072: 390142-391131 , PASA_asmbl_40073: 390225-390966
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_004032_430 0.0 - - PREDICTED: uncharacterized protein LOC105635169 [Jatropha curcas]
2 Hb_004310_150 0.0575967826 - - PREDICTED: plasminogen activator inhibitor 1 RNA-binding protein [Vitis vinifera]
3 Hb_000275_170 0.0624544023 transcription factor TF Family: Trihelix PREDICTED: trihelix transcription factor GT-3b-like [Jatropha curcas]
4 Hb_000959_210 0.0692421485 - - PREDICTED: ubiquitin carboxyl-terminal hydrolase 27 [Jatropha curcas]
5 Hb_010068_040 0.070503378 - - PREDICTED: uncharacterized protein LOC105632964 [Jatropha curcas]
6 Hb_011224_060 0.071536337 - - hypothetical protein POPTR_0011s16880g [Populus trichocarpa]
7 Hb_003935_020 0.0731779467 - - PREDICTED: protein CURVATURE THYLAKOID 1D, chloroplastic isoform X1 [Jatropha curcas]
8 Hb_120410_010 0.0753399344 - - PREDICTED: vesicle-associated membrane protein 727-like [Solanum tuberosum]
9 Hb_112798_020 0.0769839761 - - dnajc14 protein, putative [Ricinus communis]
10 Hb_002296_050 0.0797135212 - - hypothetical protein AMTR_s00001p00247600 [Amborella trichopoda]
11 Hb_002652_030 0.0805956743 - - PREDICTED: U3 small nucleolar RNA-interacting protein 2-like [Jatropha curcas]
12 Hb_000220_040 0.0809043699 - - conserved hypothetical protein [Ricinus communis]
13 Hb_002585_040 0.0820743273 - - PREDICTED: cell division control protein 48 homolog B [Jatropha curcas]
14 Hb_000093_160 0.08283804 - - PREDICTED: nuclear transcription factor Y subunit B-1-like isoform X1 [Jatropha curcas]
15 Hb_004931_070 0.0859467528 - - PREDICTED: protein root UVB sensitive 2, chloroplastic [Jatropha curcas]
16 Hb_000174_110 0.0876942799 - - PREDICTED: INO80 complex subunit D-like [Jatropha curcas]
17 Hb_008453_140 0.0877153036 - - PREDICTED: SKP1-like protein 1B [Jatropha curcas]
18 Hb_001369_220 0.0883027956 - - PREDICTED: structural maintenance of chromosomes protein 6B-like isoform X2 [Jatropha curcas]
19 Hb_005618_160 0.0884174615 - - PREDICTED: putative proline--tRNA ligase C19C7.06 [Jatropha curcas]
20 Hb_004970_090 0.0887645427 - - PREDICTED: probable BOI-related E3 ubiquitin-protein ligase 2 [Jatropha curcas]

Gene co-expression network

sample Hb_004032_430 Hb_004032_430 Hb_004310_150 Hb_004310_150 Hb_004032_430--Hb_004310_150 Hb_000275_170 Hb_000275_170 Hb_004032_430--Hb_000275_170 Hb_000959_210 Hb_000959_210 Hb_004032_430--Hb_000959_210 Hb_010068_040 Hb_010068_040 Hb_004032_430--Hb_010068_040 Hb_011224_060 Hb_011224_060 Hb_004032_430--Hb_011224_060 Hb_003935_020 Hb_003935_020 Hb_004032_430--Hb_003935_020 Hb_002518_280 Hb_002518_280 Hb_004310_150--Hb_002518_280 Hb_000152_380 Hb_000152_380 Hb_004310_150--Hb_000152_380 Hb_000093_160 Hb_000093_160 Hb_004310_150--Hb_000093_160 Hb_120410_010 Hb_120410_010 Hb_004310_150--Hb_120410_010 Hb_002477_280 Hb_002477_280 Hb_004310_150--Hb_002477_280 Hb_000220_040 Hb_000220_040 Hb_000275_170--Hb_000220_040 Hb_000275_170--Hb_004310_150 Hb_112798_020 Hb_112798_020 Hb_000275_170--Hb_112798_020 Hb_005694_110 Hb_005694_110 Hb_000275_170--Hb_005694_110 Hb_000275_170--Hb_000959_210 Hb_000959_210--Hb_003935_020 Hb_002652_030 Hb_002652_030 Hb_000959_210--Hb_002652_030 Hb_000959_210--Hb_120410_010 Hb_004093_090 Hb_004093_090 Hb_000959_210--Hb_004093_090 Hb_002530_030 Hb_002530_030 Hb_000959_210--Hb_002530_030 Hb_000174_110 Hb_000174_110 Hb_010068_040--Hb_000174_110 Hb_033153_070 Hb_033153_070 Hb_010068_040--Hb_033153_070 Hb_000334_270 Hb_000334_270 Hb_010068_040--Hb_000334_270 Hb_002175_030 Hb_002175_030 Hb_010068_040--Hb_002175_030 Hb_003029_030 Hb_003029_030 Hb_010068_040--Hb_003029_030 Hb_001433_070 Hb_001433_070 Hb_010068_040--Hb_001433_070 Hb_003050_200 Hb_003050_200 Hb_011224_060--Hb_003050_200 Hb_003292_040 Hb_003292_040 Hb_011224_060--Hb_003292_040 Hb_011970_030 Hb_011970_030 Hb_011224_060--Hb_011970_030 Hb_097783_020 Hb_097783_020 Hb_011224_060--Hb_097783_020 Hb_011224_060--Hb_003935_020 Hb_014109_040 Hb_014109_040 Hb_003935_020--Hb_014109_040 Hb_003935_020--Hb_004093_090 Hb_003935_020--Hb_120410_010 Hb_003935_020--Hb_002652_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
25.865 25.9709 22.685 17.6242 40.2222 34.6531
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
21.2204 43.9541 16.5195 20.5074 12.3952

CAGE analysis