Hb_004032_460

Information

Type -
Description -
Location Contig4032: 402952-403851
Sequence    

Annotation

kegg
ID -
description -
nr
ID -
description -
swissprot
ID -
description -
trembl
ID -
description -
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_40075: 402848-415008
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_004032_460 0.0 - - -
2 Hb_000088_180 0.0779774718 - - hypothetical protein JCGZ_11198 [Jatropha curcas]
3 Hb_000173_370 0.0817595776 transcription factor TF Family: FAR1 PREDICTED: protein FAR1-RELATED SEQUENCE 7-like isoform X1 [Jatropha curcas]
4 Hb_000300_540 0.0866467603 - - PREDICTED: syntaxin-132 [Jatropha curcas]
5 Hb_000365_350 0.0867443992 - - PREDICTED: uncharacterized protein LOC105649068 [Jatropha curcas]
6 Hb_000849_150 0.096858393 - - hypothetical protein JCGZ_15099 [Jatropha curcas]
7 Hb_000363_340 0.0996608654 - - PREDICTED: syntaxin-52-like isoform X2 [Jatropha curcas]
8 Hb_060437_010 0.1008560707 - - E3 ubiquitin protein ligase RIE1 [Morus notabilis]
9 Hb_012807_120 0.1021253429 - - metal ion binding protein, putative [Ricinus communis]
10 Hb_000025_750 0.1035495575 - - PREDICTED: nuclear speckle splicing regulatory protein 1-like [Jatropha curcas]
11 Hb_000392_280 0.1067112038 - - PREDICTED: pectinesterase 3 [Jatropha curcas]
12 Hb_006478_070 0.1086737127 - - PREDICTED: uncharacterized protein LOC105649957 [Jatropha curcas]
13 Hb_000050_120 0.1100818921 - - PREDICTED: uncharacterized protein LOC105630790 [Jatropha curcas]
14 Hb_001016_060 0.1102681715 - - conserved hypothetical protein [Ricinus communis]
15 Hb_002025_140 0.1105082392 - - PREDICTED: UBX domain-containing protein 2 isoform X1 [Jatropha curcas]
16 Hb_000188_190 0.1107683315 - - -
17 Hb_000613_020 0.1126953467 - - PREDICTED: U-box domain-containing protein 15 [Jatropha curcas]
18 Hb_000692_260 0.114549643 - - PREDICTED: uncharacterized protein LOC105635282 [Jatropha curcas]
19 Hb_002728_020 0.1152276372 transcription factor TF Family: GNAT PREDICTED: uncharacterized protein LOC105649143 isoform X1 [Jatropha curcas]
20 Hb_003506_040 0.1164795461 - - hypothetical protein PHAVU_009G052500g [Phaseolus vulgaris]

Gene co-expression network

sample Hb_004032_460 Hb_004032_460 Hb_000088_180 Hb_000088_180 Hb_004032_460--Hb_000088_180 Hb_000173_370 Hb_000173_370 Hb_004032_460--Hb_000173_370 Hb_000300_540 Hb_000300_540 Hb_004032_460--Hb_000300_540 Hb_000365_350 Hb_000365_350 Hb_004032_460--Hb_000365_350 Hb_000849_150 Hb_000849_150 Hb_004032_460--Hb_000849_150 Hb_000363_340 Hb_000363_340 Hb_004032_460--Hb_000363_340 Hb_000320_440 Hb_000320_440 Hb_000088_180--Hb_000320_440 Hb_000260_700 Hb_000260_700 Hb_000088_180--Hb_000260_700 Hb_000088_180--Hb_000365_350 Hb_001776_080 Hb_001776_080 Hb_000088_180--Hb_001776_080 Hb_000088_180--Hb_000173_370 Hb_002025_140 Hb_002025_140 Hb_000173_370--Hb_002025_140 Hb_004531_090 Hb_004531_090 Hb_000173_370--Hb_004531_090 Hb_000573_040 Hb_000573_040 Hb_000173_370--Hb_000573_040 Hb_000173_210 Hb_000173_210 Hb_000173_370--Hb_000173_210 Hb_007786_010 Hb_007786_010 Hb_000300_540--Hb_007786_010 Hb_000062_230 Hb_000062_230 Hb_000300_540--Hb_000062_230 Hb_002172_030 Hb_002172_030 Hb_000300_540--Hb_002172_030 Hb_000300_540--Hb_000363_340 Hb_000300_540--Hb_000173_370 Hb_012807_120 Hb_012807_120 Hb_000365_350--Hb_012807_120 Hb_000050_120 Hb_000050_120 Hb_000365_350--Hb_000050_120 Hb_098315_100 Hb_098315_100 Hb_000365_350--Hb_098315_100 Hb_006478_070 Hb_006478_070 Hb_000365_350--Hb_006478_070 Hb_000025_750 Hb_000025_750 Hb_000849_150--Hb_000025_750 Hb_060437_010 Hb_060437_010 Hb_000849_150--Hb_060437_010 Hb_001408_090 Hb_001408_090 Hb_000849_150--Hb_001408_090 Hb_002897_040 Hb_002897_040 Hb_000849_150--Hb_002897_040 Hb_005725_070 Hb_005725_070 Hb_000849_150--Hb_005725_070 Hb_000392_280 Hb_000392_280 Hb_000363_340--Hb_000392_280 Hb_001016_060 Hb_001016_060 Hb_000363_340--Hb_001016_060 Hb_012977_010 Hb_012977_010 Hb_000363_340--Hb_012977_010 Hb_000363_340--Hb_005725_070 Hb_001498_030 Hb_001498_030 Hb_000363_340--Hb_001498_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
93.8883 12.0387 6.8496 5.01279 82.1211 60.6033
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
24.6045 18.238 14.9441 5.41588 3.41108

CAGE analysis