Hb_004033_020

Information

Type transcription factor
Description TF Family: MYB-related
Location Contig4033: 19896-20522
Sequence    

Annotation

kegg
ID pmum:103329399
description transcription factor CPC-like
nr
ID XP_007216010.1
description hypothetical protein PRUPE_ppa014728mg [Prunus persica]
swissprot
ID O22059
description Transcription factor CPC OS=Arabidopsis thaliana GN=CPC PE=1 SV=1
trembl
ID M5WU46
description Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa014728mg PE=4 SV=1
Gene Ontology
ID GO:0003677
description transcription factor cpc-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_40079: 20463-20984
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_004033_020 0.0 transcription factor TF Family: MYB-related hypothetical protein PRUPE_ppa014728mg [Prunus persica]
2 Hb_004125_070 0.189637892 - - Glycolipid transfer protein, putative [Ricinus communis]
3 Hb_005854_050 0.2062941021 - - conserved hypothetical protein [Ricinus communis]
4 Hb_184541_010 0.2102816452 - - PREDICTED: selT-like protein [Jatropha curcas]
5 Hb_000251_020 0.2154218197 - - hypothetical protein CISIN_1g028541mg [Citrus sinensis]
6 Hb_009083_030 0.2176334142 - - hypothetical protein POPTR_0007s14760g [Populus trichocarpa]
7 Hb_121694_010 0.2190892839 - - structural constituent of ribosome, putative [Ricinus communis]
8 Hb_011918_010 0.2264068676 - - hypothetical protein glysoja_041948 [Glycine soja]
9 Hb_007741_090 0.2313918619 - - Autophagy-related 8f -like protein [Gossypium arboreum]
10 Hb_010984_040 0.234708903 - - hypothetical protein M569_17286, partial [Genlisea aurea]
11 Hb_188313_010 0.2370553301 - - PREDICTED: LOW QUALITY PROTEIN: carboxymethylenebutenolidase homolog [Jatropha curcas]
12 Hb_041601_010 0.2379857027 - - -
13 Hb_017014_020 0.2386128635 - - -
14 Hb_002582_080 0.249595513 - - -
15 Hb_005529_020 0.2535039719 - - PREDICTED: probable xyloglucan endotransglucosylase/hydrolase protein 32 [Jatropha curcas]
16 Hb_004525_050 0.2610809305 - - similar to Drosophila melanogaster CG10960, partial [Drosophila yakuba]
17 Hb_007575_090 0.2612235476 - - putative. proteolipid subunit of vacuolar H+ ATPase, partial [Zea mays]
18 Hb_080081_010 0.2649749788 - - PREDICTED: 2-alkenal reductase (NADP(+)-dependent)-like [Fragaria vesca subsp. vesca]
19 Hb_001247_030 0.2657930569 - - -
20 Hb_022614_010 0.2676130179 - - -

Gene co-expression network

sample Hb_004033_020 Hb_004033_020 Hb_004125_070 Hb_004125_070 Hb_004033_020--Hb_004125_070 Hb_005854_050 Hb_005854_050 Hb_004033_020--Hb_005854_050 Hb_184541_010 Hb_184541_010 Hb_004033_020--Hb_184541_010 Hb_000251_020 Hb_000251_020 Hb_004033_020--Hb_000251_020 Hb_009083_030 Hb_009083_030 Hb_004033_020--Hb_009083_030 Hb_121694_010 Hb_121694_010 Hb_004033_020--Hb_121694_010 Hb_004125_070--Hb_184541_010 Hb_001247_030 Hb_001247_030 Hb_004125_070--Hb_001247_030 Hb_011918_010 Hb_011918_010 Hb_004125_070--Hb_011918_010 Hb_008185_020 Hb_008185_020 Hb_004125_070--Hb_008185_020 Hb_188313_010 Hb_188313_010 Hb_004125_070--Hb_188313_010 Hb_004125_070--Hb_009083_030 Hb_005854_050--Hb_121694_010 Hb_000011_380 Hb_000011_380 Hb_005854_050--Hb_000011_380 Hb_034280_010 Hb_034280_010 Hb_005854_050--Hb_034280_010 Hb_014096_010 Hb_014096_010 Hb_005854_050--Hb_014096_010 Hb_003455_010 Hb_003455_010 Hb_005854_050--Hb_003455_010 Hb_184541_010--Hb_188313_010 Hb_184541_010--Hb_011918_010 Hb_184541_010--Hb_008185_020 Hb_184541_010--Hb_009083_030 Hb_100137_010 Hb_100137_010 Hb_184541_010--Hb_100137_010 Hb_041601_010 Hb_041601_010 Hb_000251_020--Hb_041601_010 Hb_000953_120 Hb_000953_120 Hb_000251_020--Hb_000953_120 Hb_022614_010 Hb_022614_010 Hb_000251_020--Hb_022614_010 Hb_162090_010 Hb_162090_010 Hb_000251_020--Hb_162090_010 Hb_017014_020 Hb_017014_020 Hb_000251_020--Hb_017014_020 Hb_009083_030--Hb_188313_010 Hb_182713_020 Hb_182713_020 Hb_009083_030--Hb_182713_020 Hb_009083_030--Hb_100137_010 Hb_009083_030--Hb_017014_020 Hb_002611_030 Hb_002611_030 Hb_009083_030--Hb_002611_030 Hb_121694_010--Hb_009083_030 Hb_121694_010--Hb_184541_010 Hb_047691_010 Hb_047691_010 Hb_121694_010--Hb_047691_010 Hb_010984_040 Hb_010984_040 Hb_121694_010--Hb_010984_040 Hb_121694_010--Hb_004125_070 Hb_001059_140 Hb_001059_140 Hb_121694_010--Hb_001059_140
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
4.79416 9.92343 17.1208 297.357 1.75569 55.8568
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
41.077 3.56807 8.01046 57.9029 6.97287

CAGE analysis