Hb_004037_020

Information

Type -
Description -
Location Contig4037: 9982-13794
Sequence    

Annotation

kegg
ID pop:POPTR_0003s03180g
description hypothetical protein
nr
ID XP_012070125.1
description PREDICTED: uncharacterized protein LOC105632366 isoform X1 [Jatropha curcas]
swissprot
ID Q5ZLV2
description Peptidyl-prolyl cis-trans isomerase-like 3 OS=Gallus gallus GN=PPIL3 PE=2 SV=1
trembl
ID A0A067L791
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_03505 PE=4 SV=1
Gene Ontology
ID GO:0003755
description peptidyl-prolyl cis-trans isomerases isoform 1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_40083: 9967-13794 , PASA_asmbl_40084: 11298-11829
cDNA
(Sanger)
(ID:Location)		 036_O01.ab1: 9967-12098 , 043_J15.ab1: 9967-12891

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_004037_020 0.0 - - PREDICTED: uncharacterized protein LOC105632366 isoform X1 [Jatropha curcas]
2 Hb_016172_030 0.0497815828 - - PREDICTED: probable UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase SEC [Jatropha curcas]
3 Hb_000345_160 0.0509394344 - - PREDICTED: acyl-CoA-binding domain-containing protein 4-like [Jatropha curcas]
4 Hb_001481_060 0.0575139321 - - PREDICTED: E3 ubiquitin-protein ligase HOS1 isoform X1 [Jatropha curcas]
5 Hb_086063_020 0.0578406352 transcription factor TF Family: SNF2 PREDICTED: SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A-like protein 1 [Jatropha curcas]
6 Hb_000317_100 0.0624507654 - - PREDICTED: uncharacterized protein LOC105646995 [Jatropha curcas]
7 Hb_004705_170 0.0627207543 - - PREDICTED: ubiquitin thioesterase otubain-like [Jatropha curcas]
8 Hb_000089_180 0.0638202085 - - PREDICTED: homoserine kinase-like [Jatropha curcas]
9 Hb_102698_010 0.0638353193 - - PREDICTED: vacuolar cation/proton exchanger 5-like isoform X1 [Jatropha curcas]
10 Hb_031527_030 0.0644299909 - - PREDICTED: ribosomal RNA processing protein 1 homolog [Jatropha curcas]
11 Hb_000215_300 0.064546866 - - mitochondrial processing peptidase alpha subunit, putative [Ricinus communis]
12 Hb_000258_110 0.0657380463 - - PREDICTED: probable apyrase 6 isoform X1 [Jatropha curcas]
13 Hb_060980_010 0.0687881576 - - PREDICTED: BRASSINOSTEROID INSENSITIVE 1-associated receptor kinase 1-like isoform X1 [Populus euphratica]
14 Hb_000085_450 0.0688101933 transcription factor TF Family: WRKY PREDICTED: probable WRKY transcription factor 20 [Jatropha curcas]
15 Hb_001408_110 0.0692008041 - - hypothetical protein EUGRSUZ_I02762 [Eucalyptus grandis]
16 Hb_002883_030 0.0692324697 - - PREDICTED: uncharacterized protein LOC105638222 [Jatropha curcas]
17 Hb_000409_050 0.0694788667 transcription factor TF Family: HMG PREDICTED: FACT complex subunit SSRP1 [Jatropha curcas]
18 Hb_003498_080 0.0700190833 - - PREDICTED: decapping 5-like protein isoform X2 [Jatropha curcas]
19 Hb_002749_060 0.0700866504 - - PREDICTED: protein transport protein Sec61 subunit alpha-like [Jatropha curcas]
20 Hb_002989_020 0.071091435 - - PREDICTED: uncharacterized protein LOC105630013 isoform X2 [Jatropha curcas]

Gene co-expression network

sample Hb_004037_020 Hb_004037_020 Hb_016172_030 Hb_016172_030 Hb_004037_020--Hb_016172_030 Hb_000345_160 Hb_000345_160 Hb_004037_020--Hb_000345_160 Hb_001481_060 Hb_001481_060 Hb_004037_020--Hb_001481_060 Hb_086063_020 Hb_086063_020 Hb_004037_020--Hb_086063_020 Hb_000317_100 Hb_000317_100 Hb_004037_020--Hb_000317_100 Hb_004705_170 Hb_004705_170 Hb_004037_020--Hb_004705_170 Hb_060980_010 Hb_060980_010 Hb_016172_030--Hb_060980_010 Hb_021165_010 Hb_021165_010 Hb_016172_030--Hb_021165_010 Hb_027506_010 Hb_027506_010 Hb_016172_030--Hb_027506_010 Hb_065500_020 Hb_065500_020 Hb_016172_030--Hb_065500_020 Hb_024650_080 Hb_024650_080 Hb_016172_030--Hb_024650_080 Hb_000345_160--Hb_004705_170 Hb_000345_160--Hb_001481_060 Hb_000049_020 Hb_000049_020 Hb_000345_160--Hb_000049_020 Hb_000170_090 Hb_000170_090 Hb_000345_160--Hb_000170_090 Hb_004452_110 Hb_004452_110 Hb_000345_160--Hb_004452_110 Hb_001716_020 Hb_001716_020 Hb_001481_060--Hb_001716_020 Hb_007248_030 Hb_007248_030 Hb_001481_060--Hb_007248_030 Hb_002492_010 Hb_002492_010 Hb_001481_060--Hb_002492_010 Hb_033312_040 Hb_033312_040 Hb_001481_060--Hb_033312_040 Hb_000215_300 Hb_000215_300 Hb_086063_020--Hb_000215_300 Hb_001405_210 Hb_001405_210 Hb_086063_020--Hb_001405_210 Hb_000258_110 Hb_000258_110 Hb_086063_020--Hb_000258_110 Hb_000702_090 Hb_000702_090 Hb_086063_020--Hb_000702_090 Hb_086063_020--Hb_016172_030 Hb_005215_010 Hb_005215_010 Hb_000317_100--Hb_005215_010 Hb_002890_130 Hb_002890_130 Hb_000317_100--Hb_002890_130 Hb_011819_020 Hb_011819_020 Hb_000317_100--Hb_011819_020 Hb_003040_050 Hb_003040_050 Hb_000317_100--Hb_003040_050 Hb_002411_110 Hb_002411_110 Hb_000317_100--Hb_002411_110 Hb_000773_040 Hb_000773_040 Hb_000317_100--Hb_000773_040 Hb_004705_170--Hb_000215_300 Hb_007472_070 Hb_007472_070 Hb_004705_170--Hb_007472_070 Hb_000778_010 Hb_000778_010 Hb_004705_170--Hb_000778_010 Hb_163175_010 Hb_163175_010 Hb_004705_170--Hb_163175_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
8.42486 15.8277 12.9343 19.0593 9.83119 11.5935
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
10.3399 8.5601 7.70736 16.1088 15.5936

CAGE analysis