Hb_004037_030

Information

Type -
Description -
Location Contig4037: 13909-25128
Sequence    

Annotation

kegg
ID gmx:100812359
description DNA repair endonuclease UVH1-like
nr
ID XP_012070118.1
description PREDICTED: DNA repair endonuclease UVH1 isoform X2 [Jatropha curcas]
swissprot
ID Q9LKI5
description DNA repair endonuclease UVH1 OS=Arabidopsis thaliana GN=UVH1 PE=1 SV=2
trembl
ID K7LMX6
description Uncharacterized protein OS=Glycine max PE=4 SV=1
Gene Ontology
ID GO:0000014
description dna repair endonuclease uvh1 isoform x2

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_40083: 9967-13794 , PASA_asmbl_40085: 14301-19789 , PASA_asmbl_40086: 15265-17255 , PASA_asmbl_40087: 15171-17284 , PASA_asmbl_40088: 20612-24238
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_004037_030 0.0 - - PREDICTED: DNA repair endonuclease UVH1 isoform X2 [Jatropha curcas]
2 Hb_007904_180 0.0744845446 - - PREDICTED: cleavage and polyadenylation specificity factor subunit 6-like [Jatropha curcas]
3 Hb_000002_440 0.074490447 - - PREDICTED: MATH domain-containing protein At5g43560-like [Jatropha curcas]
4 Hb_000699_250 0.0766616796 - - Poly(rC)-binding protein, putative [Ricinus communis]
5 Hb_000096_180 0.0794903825 - - PREDICTED: pentatricopeptide repeat-containing protein At5g67570, chloroplastic-like isoform X1 [Jatropha curcas]
6 Hb_000239_070 0.0804144051 - - PREDICTED: activating signal cointegrator 1 complex subunit 2 isoform X1 [Jatropha curcas]
7 Hb_042487_010 0.082009953 - - PREDICTED: DEAD-box ATP-dependent RNA helicase 9-like [Jatropha curcas]
8 Hb_010180_040 0.0822123545 - - PREDICTED: prosaposin isoform X1 [Jatropha curcas]
9 Hb_000475_020 0.0822989485 - - PREDICTED: dehydrogenase/reductase SDR family member on chromosome X homolog isoform X2 [Jatropha curcas]
10 Hb_002883_010 0.0833217838 - - PREDICTED: putative methyltransferase NSUN6 isoform X1 [Jatropha curcas]
11 Hb_002235_320 0.0881215466 - - PREDICTED: polypyrimidine tract-binding protein homolog 1 isoform X1 [Jatropha curcas]
12 Hb_001301_210 0.0885587938 - - PREDICTED: DEAD-box ATP-dependent RNA helicase 32 [Jatropha curcas]
13 Hb_000108_080 0.0892741894 - - PREDICTED: importin-5 [Jatropha curcas]
14 Hb_007849_020 0.0895402555 transcription factor TF Family: MYB cell division control protein, putative [Ricinus communis]
15 Hb_004225_130 0.090207089 transcription factor TF Family: MYB-related PREDICTED: uncharacterized protein LOC105628060 isoform X1 [Jatropha curcas]
16 Hb_001811_120 0.0908065639 - - PREDICTED: KH domain-containing protein At4g18375 isoform X1 [Jatropha curcas]
17 Hb_000244_240 0.0909329232 - - ATP binding protein, putative [Ricinus communis]
18 Hb_000136_150 0.0913766666 - - hypothetical protein VITISV_038366 [Vitis vinifera]
19 Hb_000594_020 0.0929739771 - - PREDICTED: mediator of RNA polymerase II transcription subunit 25 isoform X2 [Jatropha curcas]
20 Hb_000340_160 0.0934419727 - - PREDICTED: elongation factor Tu, mitochondrial [Jatropha curcas]

Gene co-expression network

sample Hb_004037_030 Hb_004037_030 Hb_007904_180 Hb_007904_180 Hb_004037_030--Hb_007904_180 Hb_000002_440 Hb_000002_440 Hb_004037_030--Hb_000002_440 Hb_000699_250 Hb_000699_250 Hb_004037_030--Hb_000699_250 Hb_000096_180 Hb_000096_180 Hb_004037_030--Hb_000096_180 Hb_000239_070 Hb_000239_070 Hb_004037_030--Hb_000239_070 Hb_042487_010 Hb_042487_010 Hb_004037_030--Hb_042487_010 Hb_000475_020 Hb_000475_020 Hb_007904_180--Hb_000475_020 Hb_007904_180--Hb_000002_440 Hb_001811_120 Hb_001811_120 Hb_007904_180--Hb_001811_120 Hb_000813_100 Hb_000813_100 Hb_007904_180--Hb_000813_100 Hb_006816_300 Hb_006816_300 Hb_007904_180--Hb_006816_300 Hb_025477_060 Hb_025477_060 Hb_000002_440--Hb_025477_060 Hb_000227_380 Hb_000227_380 Hb_000002_440--Hb_000227_380 Hb_000002_440--Hb_000813_100 Hb_000002_440--Hb_000096_180 Hb_000594_020 Hb_000594_020 Hb_000002_440--Hb_000594_020 Hb_002883_010 Hb_002883_010 Hb_000002_440--Hb_002883_010 Hb_000340_160 Hb_000340_160 Hb_000699_250--Hb_000340_160 Hb_000699_250--Hb_042487_010 Hb_008714_020 Hb_008714_020 Hb_000699_250--Hb_008714_020 Hb_000046_450 Hb_000046_450 Hb_000699_250--Hb_000046_450 Hb_004970_150 Hb_004970_150 Hb_000699_250--Hb_004970_150 Hb_027073_060 Hb_027073_060 Hb_000096_180--Hb_027073_060 Hb_000096_180--Hb_025477_060 Hb_002291_070 Hb_002291_070 Hb_000096_180--Hb_002291_070 Hb_002043_170 Hb_002043_170 Hb_000096_180--Hb_002043_170 Hb_001437_100 Hb_001437_100 Hb_000096_180--Hb_001437_100 Hb_000239_070--Hb_000340_160 Hb_000239_070--Hb_000227_380 Hb_000239_070--Hb_002883_010 Hb_000331_190 Hb_000331_190 Hb_000239_070--Hb_000331_190 Hb_175338_020 Hb_175338_020 Hb_000239_070--Hb_175338_020 Hb_002235_320 Hb_002235_320 Hb_000239_070--Hb_002235_320 Hb_007849_020 Hb_007849_020 Hb_042487_010--Hb_007849_020 Hb_029142_010 Hb_029142_010 Hb_042487_010--Hb_029142_010 Hb_025012_010 Hb_025012_010 Hb_042487_010--Hb_025012_010 Hb_042487_010--Hb_006816_300 Hb_042487_010--Hb_000340_160
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
43.5981 34.7973 10.1971 11.517 48.3883 82.4466
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
24.4409 9.61743 12.7991 22.3894 15.3866

CAGE analysis