Hb_004040_010

Information

Type -
Description -
Location Contig4040: 11948-18502
Sequence    

Annotation

kegg
ID pop:POPTR_0019s14250g
description POPTRDRAFT_574562; hypothetical protein
nr
ID XP_002326099.2
description hypothetical protein POPTR_0019s14250g [Populus trichocarpa]
swissprot
ID Q9ZR08
description G-type lectin S-receptor-like serine/threonine-protein kinase At4g03230 OS=Arabidopsis thaliana GN=At4g03230 PE=3 SV=3
trembl
ID B9INT4
description Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0019s14250g PE=4 SV=2
Gene Ontology
ID GO:0005488
description g-type lectin s-receptor-like serine threonine-protein kinase at4g03230 isoform x1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_40091: 12086-15912 , PASA_asmbl_40093: 16729-18649
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_004040_010 0.0 - - hypothetical protein POPTR_0019s14250g [Populus trichocarpa]
2 Hb_008019_010 0.0687164127 - - PREDICTED: nitrile-specifier protein 5-like [Jatropha curcas]
3 Hb_054926_010 0.0784064743 - - glutamate receptor 2 plant, putative [Ricinus communis]
4 Hb_018134_010 0.0801391268 transcription factor TF Family: Jumonji PREDICTED: lysine-specific demethylase JMJ706 isoform X1 [Jatropha curcas]
5 Hb_011794_050 0.0874898823 - - transcription factor, putative [Ricinus communis]
6 Hb_000319_010 0.0877428974 - - hypothetical protein POPTR_0016s03600g [Populus trichocarpa]
7 Hb_000878_090 0.0944083517 - - sucrose-phosphatase family protein [Populus trichocarpa]
8 Hb_059318_010 0.10178452 - - glutamate receptor 2 plant, putative [Ricinus communis]
9 Hb_111997_010 0.1027289041 - - PREDICTED: G-type lectin S-receptor-like serine/threonine-protein kinase RLK1 [Vitis vinifera]
10 Hb_000199_040 0.1041766831 desease resistance Gene Name: TIR PREDICTED: TMV resistance protein N-like isoform X1 [Jatropha curcas]
11 Hb_004553_040 0.1049592307 - - PREDICTED: protein YLS9-like [Jatropha curcas]
12 Hb_000002_370 0.1055558227 - - PREDICTED: uncharacterized protein LOC105632103 [Jatropha curcas]
13 Hb_007632_230 0.1101717079 transcription factor TF Family: NF-YB PREDICTED: nuclear transcription factor Y subunit B-3-like [Jatropha curcas]
14 Hb_074966_010 0.1104043424 - - anthocyanidin 3-O-glucosyltransferase [Hevea brasiliensis]
15 Hb_000103_370 0.1114995332 - - PREDICTED: protein argonaute 10 [Jatropha curcas]
16 Hb_189208_060 0.1134567271 - - PREDICTED: two-pore potassium channel 5 [Jatropha curcas]
17 Hb_001366_390 0.1148821406 - - PREDICTED: uncharacterized protein LOC105642722 [Jatropha curcas]
18 Hb_018563_010 0.1195946375 transcription factor TF Family: ERF PREDICTED: ethylene-responsive transcription factor 5-like [Jatropha curcas]
19 Hb_026016_010 0.1197731283 - - PREDICTED: probable receptor-like protein kinase At1g67000 [Jatropha curcas]
20 Hb_003777_120 0.1205629889 - - -

Gene co-expression network

sample Hb_004040_010 Hb_004040_010 Hb_008019_010 Hb_008019_010 Hb_004040_010--Hb_008019_010 Hb_054926_010 Hb_054926_010 Hb_004040_010--Hb_054926_010 Hb_018134_010 Hb_018134_010 Hb_004040_010--Hb_018134_010 Hb_011794_050 Hb_011794_050 Hb_004040_010--Hb_011794_050 Hb_000319_010 Hb_000319_010 Hb_004040_010--Hb_000319_010 Hb_000878_090 Hb_000878_090 Hb_004040_010--Hb_000878_090 Hb_008019_010--Hb_018134_010 Hb_008019_010--Hb_054926_010 Hb_059318_010 Hb_059318_010 Hb_008019_010--Hb_059318_010 Hb_111997_010 Hb_111997_010 Hb_008019_010--Hb_111997_010 Hb_000103_370 Hb_000103_370 Hb_008019_010--Hb_000103_370 Hb_007632_230 Hb_007632_230 Hb_054926_010--Hb_007632_230 Hb_054926_010--Hb_000103_370 Hb_007123_010 Hb_007123_010 Hb_054926_010--Hb_007123_010 Hb_054926_010--Hb_018134_010 Hb_018134_010--Hb_111997_010 Hb_001677_170 Hb_001677_170 Hb_018134_010--Hb_001677_170 Hb_018134_010--Hb_059318_010 Hb_189208_060 Hb_189208_060 Hb_011794_050--Hb_189208_060 Hb_002374_030 Hb_002374_030 Hb_011794_050--Hb_002374_030 Hb_011794_050--Hb_059318_010 Hb_026016_010 Hb_026016_010 Hb_011794_050--Hb_026016_010 Hb_074966_010 Hb_074966_010 Hb_011794_050--Hb_074966_010 Hb_004553_040 Hb_004553_040 Hb_000319_010--Hb_004553_040 Hb_000319_010--Hb_007632_230 Hb_001277_370 Hb_001277_370 Hb_000319_010--Hb_001277_370 Hb_167206_010 Hb_167206_010 Hb_000319_010--Hb_167206_010 Hb_000319_010--Hb_002374_030 Hb_009907_020 Hb_009907_020 Hb_000878_090--Hb_009907_020 Hb_001160_050 Hb_001160_050 Hb_000878_090--Hb_001160_050 Hb_008749_010 Hb_008749_010 Hb_000878_090--Hb_008749_010 Hb_000878_090--Hb_002374_030 Hb_000152_410 Hb_000152_410 Hb_000878_090--Hb_000152_410
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 5.11088 8.1681 4.7099 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0164938 0.038937 0 0.48426 3.84012

CAGE analysis