Hb_004041_040

Information

Type -
Description -
Location Contig4041: 48118-49871
Sequence    

Annotation

kegg
ID crb:CARUB_v10024357mg
description hypothetical protein
nr
ID XP_010509555.1
description PREDICTED: mitochondrial import inner membrane translocase subunit TIM14-1 [Camelina sativa]
swissprot
ID Q8RV04
description Mitochondrial import inner membrane translocase subunit TIM14-1 OS=Arabidopsis thaliana GN=TIM14-1 PE=1 SV=1
trembl
ID R0FYN9
description Uncharacterized protein OS=Capsella rubella GN=CARUB_v10024357mg PE=4 SV=1
Gene Ontology
ID GO:0005743
description mitochondrial import inner membrane translocase subunit tim14-1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_40105: 48586-50049
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_004041_040 0.0 - - PREDICTED: mitochondrial import inner membrane translocase subunit TIM14-1 [Camelina sativa]
2 Hb_000398_160 0.082520645 - - GDP-mannose transporter, putative [Ricinus communis]
3 Hb_000224_090 0.0893820335 - - Eukaryotic translation initiation factor 1A [Gossypium arboreum]
4 Hb_003561_030 0.0981634446 - - PREDICTED: uncharacterized protein LOC105645274 [Jatropha curcas]
5 Hb_017862_010 0.098581599 - - PREDICTED: signal recognition particle 19 kDa protein-like [Jatropha curcas]
6 Hb_000272_070 0.100927255 - - snare protein YKt [Hevea brasiliensis]
7 Hb_000069_100 0.1041691931 - - conserved hypothetical protein [Ricinus communis]
8 Hb_006831_030 0.105597835 - - PREDICTED: ras-related protein RABB1c [Fragaria vesca subsp. vesca]
9 Hb_001545_060 0.1058114113 - - PREDICTED: uncharacterized protein LOC105643880 [Jatropha curcas]
10 Hb_010172_030 0.1073225431 - - hypothetical protein JCGZ_04668 [Jatropha curcas]
11 Hb_000722_040 0.1087878492 - - -
12 Hb_021409_090 0.1093248929 transcription factor TF Family: C2C2-Dof hypothetical protein POPTR_0003s14450g [Populus trichocarpa]
13 Hb_187083_010 0.1099493751 - - PREDICTED: uncharacterized protein LOC105643971 [Jatropha curcas]
14 Hb_000163_130 0.1105484881 - - hypothetical protein CICLE_v10022870mg [Citrus clementina]
15 Hb_010812_010 0.1107321494 - - hypothetical protein JCGZ_03306 [Jatropha curcas]
16 Hb_001123_120 0.1108304208 - - Uncharacterized protein TCM_042776 [Theobroma cacao]
17 Hb_000367_210 0.1137319814 - - PREDICTED: dolichol-phosphate mannosyltransferase subunit 3 [Jatropha curcas]
18 Hb_001935_030 0.1141763558 - - conserved hypothetical protein [Ricinus communis]
19 Hb_012539_020 0.1151988004 - - protein binding/ubiquitin-protein ligase 4 [Hevea brasiliensis]
20 Hb_000236_150 0.1180621058 - - glycine-rich RNA-binding protein, putative [Ricinus communis]

Gene co-expression network

sample Hb_004041_040 Hb_004041_040 Hb_000398_160 Hb_000398_160 Hb_004041_040--Hb_000398_160 Hb_000224_090 Hb_000224_090 Hb_004041_040--Hb_000224_090 Hb_003561_030 Hb_003561_030 Hb_004041_040--Hb_003561_030 Hb_017862_010 Hb_017862_010 Hb_004041_040--Hb_017862_010 Hb_000272_070 Hb_000272_070 Hb_004041_040--Hb_000272_070 Hb_000069_100 Hb_000069_100 Hb_004041_040--Hb_000069_100 Hb_006831_030 Hb_006831_030 Hb_000398_160--Hb_006831_030 Hb_000398_160--Hb_000272_070 Hb_000398_160--Hb_000069_100 Hb_001006_180 Hb_001006_180 Hb_000398_160--Hb_001006_180 Hb_003929_120 Hb_003929_120 Hb_000398_160--Hb_003929_120 Hb_000236_150 Hb_000236_150 Hb_000224_090--Hb_000236_150 Hb_003053_030 Hb_003053_030 Hb_000224_090--Hb_003053_030 Hb_000224_090--Hb_000069_100 Hb_000163_130 Hb_000163_130 Hb_000224_090--Hb_000163_130 Hb_000722_040 Hb_000722_040 Hb_000224_090--Hb_000722_040 Hb_012539_020 Hb_012539_020 Hb_000224_090--Hb_012539_020 Hb_003561_030--Hb_000722_040 Hb_011161_050 Hb_011161_050 Hb_003561_030--Hb_011161_050 Hb_187083_010 Hb_187083_010 Hb_003561_030--Hb_187083_010 Hb_000975_110 Hb_000975_110 Hb_003561_030--Hb_000975_110 Hb_000367_210 Hb_000367_210 Hb_003561_030--Hb_000367_210 Hb_003561_030--Hb_000272_070 Hb_002603_150 Hb_002603_150 Hb_017862_010--Hb_002603_150 Hb_017862_010--Hb_000069_100 Hb_001123_120 Hb_001123_120 Hb_017862_010--Hb_001123_120 Hb_000212_260 Hb_000212_260 Hb_017862_010--Hb_000212_260 Hb_017862_010--Hb_006831_030 Hb_017862_010--Hb_000224_090 Hb_006573_220 Hb_006573_220 Hb_000272_070--Hb_006573_220 Hb_001687_040 Hb_001687_040 Hb_000272_070--Hb_001687_040 Hb_000272_070--Hb_000069_100 Hb_003938_180 Hb_003938_180 Hb_000272_070--Hb_003938_180 Hb_002097_060 Hb_002097_060 Hb_000069_100--Hb_002097_060 Hb_000069_100--Hb_006831_030 Hb_000329_330 Hb_000329_330 Hb_000069_100--Hb_000329_330 Hb_001616_060 Hb_001616_060 Hb_000069_100--Hb_001616_060 Hb_000069_100--Hb_000212_260 Hb_000069_100--Hb_006573_220
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
6.26009 0.24269 1.09882 6.55916 5.52527 11.2407
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
26.108 35.7702 20.7689 6.12852 2.82883

CAGE analysis