Hb_004041_050

Information

Type -
Description -
Location Contig4041: 55058-58009
Sequence    

Annotation

kegg
ID pop:POPTR_0010s22510g
description POPTRDRAFT_227836; calmodulin-binding family protein
nr
ID XP_012078542.1
description PREDICTED: protein IQ-DOMAIN 1-like [Jatropha curcas]
swissprot
ID Q9SF32
description Protein IQ-DOMAIN 1 OS=Arabidopsis thaliana GN=IQD1 PE=1 SV=1
trembl
ID A0A067KL59
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_14761 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_40109: 56975-57982
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_004041_050 0.0 - - PREDICTED: protein IQ-DOMAIN 1-like [Jatropha curcas]
2 Hb_048476_140 0.1002863081 - - PREDICTED: dynamin-related protein 1C [Jatropha curcas]
3 Hb_001180_010 0.1072197733 - - PREDICTED: glucan endo-1,3-beta-glucosidase 9 [Jatropha curcas]
4 Hb_000076_030 0.1162438537 - - PREDICTED: microtubule-associated protein TORTIFOLIA1 isoform X1 [Jatropha curcas]
5 Hb_042083_030 0.11870694 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
6 Hb_121089_050 0.1188721976 - - conserved hypothetical protein [Ricinus communis]
7 Hb_002759_220 0.1314023565 - - altered response to gravity (arg1), plant, putative [Ricinus communis]
8 Hb_161396_010 0.1314458705 - - hypothetical protein F383_26394 [Gossypium arboreum]
9 Hb_000108_240 0.1318838112 - - hypothetical protein Csa_1G600150 [Cucumis sativus]
10 Hb_000612_090 0.1373767038 - - PREDICTED: mitochondrial carnitine/acylcarnitine carrier-like protein [Jatropha curcas]
11 Hb_000749_020 0.1380211615 - - Nucleotide-diphospho-sugar transferases superfamily protein isoform 1 [Theobroma cacao]
12 Hb_005622_020 0.1381114177 - - PREDICTED: DCC family protein At1g52590, chloroplastic [Jatropha curcas]
13 Hb_000649_040 0.1390011067 - - PREDICTED: dynamin-related protein 1C [Jatropha curcas]
14 Hb_006153_150 0.1399428239 - - PREDICTED: uncharacterized protein LOC105645999 [Jatropha curcas]
15 Hb_004724_170 0.141822953 - - PREDICTED: rho GTPase-activating protein 1 [Jatropha curcas]
16 Hb_000193_340 0.1419382535 - - PREDICTED: probable serine/threonine-protein kinase At1g54610 isoform X1 [Jatropha curcas]
17 Hb_001544_050 0.1429657139 - - PREDICTED: U-box domain-containing protein 11-like [Jatropha curcas]
18 Hb_002817_040 0.1454449519 - - PREDICTED: kinesin-II 85 kDa subunit isoform X1 [Jatropha curcas]
19 Hb_002028_180 0.1490753675 - - Glucan endo-1,3-beta-glucosidase precursor, putative [Ricinus communis]
20 Hb_003935_070 0.1515948398 - - PREDICTED: uncharacterized protein At1g04910 isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_004041_050 Hb_004041_050 Hb_048476_140 Hb_048476_140 Hb_004041_050--Hb_048476_140 Hb_001180_010 Hb_001180_010 Hb_004041_050--Hb_001180_010 Hb_000076_030 Hb_000076_030 Hb_004041_050--Hb_000076_030 Hb_042083_030 Hb_042083_030 Hb_004041_050--Hb_042083_030 Hb_121089_050 Hb_121089_050 Hb_004041_050--Hb_121089_050 Hb_002759_220 Hb_002759_220 Hb_004041_050--Hb_002759_220 Hb_048476_140--Hb_000076_030 Hb_048476_140--Hb_001180_010 Hb_022693_110 Hb_022693_110 Hb_048476_140--Hb_022693_110 Hb_048476_140--Hb_042083_030 Hb_161396_010 Hb_161396_010 Hb_048476_140--Hb_161396_010 Hb_001544_050 Hb_001544_050 Hb_001180_010--Hb_001544_050 Hb_001180_010--Hb_000076_030 Hb_004994_330 Hb_004994_330 Hb_001180_010--Hb_004994_330 Hb_000465_410 Hb_000465_410 Hb_001180_010--Hb_000465_410 Hb_002701_070 Hb_002701_070 Hb_001180_010--Hb_002701_070 Hb_000076_030--Hb_161396_010 Hb_000076_030--Hb_022693_110 Hb_011174_040 Hb_011174_040 Hb_000076_030--Hb_011174_040 Hb_000076_030--Hb_042083_030 Hb_000193_340 Hb_000193_340 Hb_042083_030--Hb_000193_340 Hb_000417_380 Hb_000417_380 Hb_042083_030--Hb_000417_380 Hb_042083_030--Hb_161396_010 Hb_002817_040 Hb_002817_040 Hb_121089_050--Hb_002817_040 Hb_000649_040 Hb_000649_040 Hb_121089_050--Hb_000649_040 Hb_121089_050--Hb_048476_140 Hb_002028_180 Hb_002028_180 Hb_121089_050--Hb_002028_180 Hb_005563_010 Hb_005563_010 Hb_121089_050--Hb_005563_010 Hb_003226_200 Hb_003226_200 Hb_002759_220--Hb_003226_200 Hb_002759_220--Hb_000193_340 Hb_003226_250 Hb_003226_250 Hb_002759_220--Hb_003226_250 Hb_002759_220--Hb_161396_010 Hb_006153_160 Hb_006153_160 Hb_002759_220--Hb_006153_160 Hb_000805_010 Hb_000805_010 Hb_002759_220--Hb_000805_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.150182 0.491992 5.16187 5.53589 0.0954182 0.247845
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.287009 0.652297 1.46019 1.17197 6.18861

CAGE analysis