Hb_004044_020

Information

Type -
Description -
Location Contig4044: 19760-35961
Sequence    

Annotation

kegg
ID pop:POPTR_0018s06620g
description hypothetical protein
nr
ID XP_012078745.1
description PREDICTED: nudix hydrolase 19, chloroplastic [Jatropha curcas]
swissprot
ID Q94A82
description Nudix hydrolase 19, chloroplastic OS=Arabidopsis thaliana GN=NUDT19 PE=1 SV=1
trembl
ID A0A067KKN3
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_13299 PE=3 SV=1
Gene Ontology
ID GO:0005829
description nudix hydrolase chloroplastic

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_004044_020 0.0 - - PREDICTED: nudix hydrolase 19, chloroplastic [Jatropha curcas]
2 Hb_000088_200 0.049691097 transcription factor TF Family: C2H2 zinc finger protein, putative [Ricinus communis]
3 Hb_000684_420 0.0705495378 transcription factor TF Family: C3H zinc finger protein, putative [Ricinus communis]
4 Hb_000236_280 0.0708045335 - - PREDICTED: coiled-coil domain-containing protein 22 homolog isoform X1 [Jatropha curcas]
5 Hb_031939_010 0.0753550228 - - Coiled-coil domain-containing protein, putative [Ricinus communis]
6 Hb_012305_070 0.0763394926 - - conserved hypothetical protein [Ricinus communis]
7 Hb_004525_100 0.0774169015 - - hypothetical protein JCGZ_18418 [Jatropha curcas]
8 Hb_002007_250 0.0801713705 - - conserved hypothetical protein [Ricinus communis]
9 Hb_001014_050 0.0809610297 transcription factor TF Family: Trihelix PREDICTED: uncharacterized protein LOC105647306 [Jatropha curcas]
10 Hb_004198_010 0.0818028343 - - Eukaryotic translation initiation factor 2 subunit beta [Theobroma cacao]
11 Hb_000072_140 0.0820224173 - - -
12 Hb_000209_090 0.0820538221 - - PREDICTED: 60S ribosomal protein L7-2-like [Jatropha curcas]
13 Hb_000290_020 0.0820940678 - - PREDICTED: eukaryotic translation initiation factor 3 subunit K-like isoform X2 [Populus euphratica]
14 Hb_000186_280 0.0827325843 - - PREDICTED: uncharacterized protein At1g04910-like isoform X2 [Jatropha curcas]
15 Hb_073171_080 0.0829728319 - - PREDICTED: MMS19 nucleotide excision repair protein homolog isoform X1 [Jatropha curcas]
16 Hb_000175_390 0.0833608647 - - DNA-directed RNA polymerase III subunit F, putative [Ricinus communis]
17 Hb_003126_040 0.0836109836 - - conserved hypothetical protein [Ricinus communis]
18 Hb_000617_220 0.0837493094 - - PREDICTED: 60S ribosomal protein L7-2-like [Jatropha curcas]
19 Hb_011848_010 0.0862467061 - - PREDICTED: 40S ribosomal protein S4-3 [Jatropha curcas]
20 Hb_178968_100 0.0863032449 - - PREDICTED: putative glucose-6-phosphate 1-epimerase isoform X1 [Populus euphratica]

Gene co-expression network

sample Hb_004044_020 Hb_004044_020 Hb_000088_200 Hb_000088_200 Hb_004044_020--Hb_000088_200 Hb_000684_420 Hb_000684_420 Hb_004044_020--Hb_000684_420 Hb_000236_280 Hb_000236_280 Hb_004044_020--Hb_000236_280 Hb_031939_010 Hb_031939_010 Hb_004044_020--Hb_031939_010 Hb_012305_070 Hb_012305_070 Hb_004044_020--Hb_012305_070 Hb_004525_100 Hb_004525_100 Hb_004044_020--Hb_004525_100 Hb_000088_200--Hb_004525_100 Hb_000088_200--Hb_000236_280 Hb_000072_140 Hb_000072_140 Hb_000088_200--Hb_000072_140 Hb_178968_100 Hb_178968_100 Hb_000088_200--Hb_178968_100 Hb_000175_390 Hb_000175_390 Hb_000088_200--Hb_000175_390 Hb_000076_080 Hb_000076_080 Hb_000684_420--Hb_000076_080 Hb_002097_090 Hb_002097_090 Hb_000684_420--Hb_002097_090 Hb_000186_280 Hb_000186_280 Hb_000684_420--Hb_000186_280 Hb_002400_180 Hb_002400_180 Hb_000684_420--Hb_002400_180 Hb_004724_360 Hb_004724_360 Hb_000684_420--Hb_004724_360 Hb_073171_080 Hb_073171_080 Hb_000684_420--Hb_073171_080 Hb_004241_070 Hb_004241_070 Hb_000236_280--Hb_004241_070 Hb_000104_080 Hb_000104_080 Hb_000236_280--Hb_000104_080 Hb_000236_280--Hb_073171_080 Hb_000236_280--Hb_004525_100 Hb_011942_080 Hb_011942_080 Hb_031939_010--Hb_011942_080 Hb_008887_050 Hb_008887_050 Hb_031939_010--Hb_008887_050 Hb_000290_020 Hb_000290_020 Hb_031939_010--Hb_000290_020 Hb_003044_100 Hb_003044_100 Hb_031939_010--Hb_003044_100 Hb_001014_010 Hb_001014_010 Hb_031939_010--Hb_001014_010 Hb_005245_130 Hb_005245_130 Hb_031939_010--Hb_005245_130 Hb_012305_070--Hb_000684_420 Hb_000645_150 Hb_000645_150 Hb_012305_070--Hb_000645_150 Hb_012305_070--Hb_000186_280 Hb_012305_070--Hb_001014_010 Hb_000236_370 Hb_000236_370 Hb_012305_070--Hb_000236_370 Hb_003384_030 Hb_003384_030 Hb_012305_070--Hb_003384_030 Hb_000617_220 Hb_000617_220 Hb_004525_100--Hb_000617_220 Hb_000976_270 Hb_000976_270 Hb_004525_100--Hb_000976_270 Hb_003126_040 Hb_003126_040 Hb_004525_100--Hb_003126_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
9.49864 3.56308 2.84494 2.35064 10.5692 10.6386
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
4.76495 6.44037 3.19931 2.70361 2.50735

CAGE analysis