Hb_004044_030

Information

Type -
Description -
Location Contig4044: 36364-38741
Sequence    

Annotation

kegg
ID rcu:RCOM_0221080
description racemase and epimerase, acting on amino acids and derivatives, putative
nr
ID XP_012078746.1
description PREDICTED: uncharacterized protein LOC105639335 [Jatropha curcas]
swissprot
ID O58403
description Aspartate racemase OS=Pyrococcus horikoshii (strain ATCC 700860 / DSM 12428 / JCM 9974 / NBRC 100139 / OT-3) GN=PH0670 PE=1 SV=1
trembl
ID A0A067KJD4
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_13300 PE=4 SV=1
Gene Ontology
ID GO:0036361
description amino-acid racemase isoform 2

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_40115: 37334-38089 , PASA_asmbl_40116: 37334-37782 , PASA_asmbl_40117: 38461-38642
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_004044_030 0.0 - - PREDICTED: uncharacterized protein LOC105639335 [Jatropha curcas]
2 Hb_022501_020 0.1124515949 - - AMP dependent CoA ligase, putative [Ricinus communis]
3 Hb_003430_020 0.1257812069 - - PREDICTED: aldehyde dehydrogenase family 2 member B7, mitochondrial-like [Jatropha curcas]
4 Hb_000589_180 0.1276986901 transcription factor TF Family: GRAS PREDICTED: scarecrow-like protein 9 [Jatropha curcas]
5 Hb_005183_200 0.1310140481 - - EG964 [Manihot glaziovii]
6 Hb_003453_030 0.1334268393 - - hypothetical protein JCGZ_26893 [Jatropha curcas]
7 Hb_001259_100 0.1351189403 - - chloride channel-like family protein [Populus trichocarpa]
8 Hb_002551_090 0.1359113317 - - hypothetical protein JCGZ_17224 [Jatropha curcas]
9 Hb_052764_080 0.1395264462 - - PREDICTED: probable ADP-ribosylation factor GTPase-activating protein AGD5 isoform X1 [Jatropha curcas]
10 Hb_006594_060 0.1426499557 transcription factor TF Family: HSF PREDICTED: heat shock factor protein HSF24 [Jatropha curcas]
11 Hb_012807_060 0.1427780419 - - ABC transporter family protein [Hevea brasiliensis]
12 Hb_004195_170 0.1442130871 - - ATP binding protein, putative [Ricinus communis]
13 Hb_002173_060 0.1506214241 - - hypothetical protein JCGZ_12464 [Jatropha curcas]
14 Hb_073171_010 0.1512482949 - - PREDICTED: ABC transporter G family member 29-like [Jatropha curcas]
15 Hb_009581_050 0.1523556382 - - hypothetical protein CISIN_1g0025812mg, partial [Citrus sinensis]
16 Hb_000086_370 0.1530642937 - - Long-chain-alcohol oxidase FAO2 [Triticum urartu]
17 Hb_000236_110 0.1564705032 - - PREDICTED: chaperone protein dnaJ 20, chloroplastic [Jatropha curcas]
18 Hb_000844_100 0.1574778119 - - hypothetical protein JCGZ_04351 [Jatropha curcas]
19 Hb_002750_010 0.1604387134 transcription factor TF Family: WRKY WRKY transcription factor 15 family protein [Populus trichocarpa]
20 Hb_000367_310 0.1606809167 - - Brassinosteroid LRR receptor kinase precursor, putative [Ricinus communis]

Gene co-expression network

sample Hb_004044_030 Hb_004044_030 Hb_022501_020 Hb_022501_020 Hb_004044_030--Hb_022501_020 Hb_003430_020 Hb_003430_020 Hb_004044_030--Hb_003430_020 Hb_000589_180 Hb_000589_180 Hb_004044_030--Hb_000589_180 Hb_005183_200 Hb_005183_200 Hb_004044_030--Hb_005183_200 Hb_003453_030 Hb_003453_030 Hb_004044_030--Hb_003453_030 Hb_001259_100 Hb_001259_100 Hb_004044_030--Hb_001259_100 Hb_006241_010 Hb_006241_010 Hb_022501_020--Hb_006241_010 Hb_012807_060 Hb_012807_060 Hb_022501_020--Hb_012807_060 Hb_022501_020--Hb_003453_030 Hb_002551_090 Hb_002551_090 Hb_022501_020--Hb_002551_090 Hb_006594_060 Hb_006594_060 Hb_022501_020--Hb_006594_060 Hb_009581_040 Hb_009581_040 Hb_003430_020--Hb_009581_040 Hb_134017_010 Hb_134017_010 Hb_003430_020--Hb_134017_010 Hb_009581_050 Hb_009581_050 Hb_003430_020--Hb_009581_050 Hb_003439_090 Hb_003439_090 Hb_003430_020--Hb_003439_090 Hb_003430_020--Hb_005183_200 Hb_003430_020--Hb_012807_060 Hb_000589_180--Hb_003430_020 Hb_002007_140 Hb_002007_140 Hb_000589_180--Hb_002007_140 Hb_000086_370 Hb_000086_370 Hb_000589_180--Hb_000086_370 Hb_000589_180--Hb_009581_050 Hb_002475_100 Hb_002475_100 Hb_000589_180--Hb_002475_100 Hb_000000_060 Hb_000000_060 Hb_000589_180--Hb_000000_060 Hb_001515_050 Hb_001515_050 Hb_005183_200--Hb_001515_050 Hb_003439_020 Hb_003439_020 Hb_005183_200--Hb_003439_020 Hb_005183_200--Hb_009581_040 Hb_052764_080 Hb_052764_080 Hb_005183_200--Hb_052764_080 Hb_074312_020 Hb_074312_020 Hb_005183_200--Hb_074312_020 Hb_004195_170 Hb_004195_170 Hb_003453_030--Hb_004195_170 Hb_001408_050 Hb_001408_050 Hb_003453_030--Hb_001408_050 Hb_003453_030--Hb_012807_060 Hb_001454_410 Hb_001454_410 Hb_003453_030--Hb_001454_410 Hb_003453_030--Hb_009581_050 Hb_073171_010 Hb_073171_010 Hb_001259_100--Hb_073171_010 Hb_001259_100--Hb_052764_080 Hb_001259_100--Hb_005183_200 Hb_000429_110 Hb_000429_110 Hb_001259_100--Hb_000429_110 Hb_010381_110 Hb_010381_110 Hb_001259_100--Hb_010381_110
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0839814 6.39211 0.357278 3.97503 0.0372265 0.0113509
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.206405 0.208785 0.261997 6.857 1.45893

CAGE analysis