Hb_004044_050

Information

Type transcription factor
Description TF Family: C3H
Location Contig4044: 51552-55463
Sequence    

Annotation

kegg
ID rcu:RCOM_0221100
description nucleic acid binding protein, putative
nr
ID XP_012078749.1
description PREDICTED: zinc finger CCCH domain-containing protein 34-like [Jatropha curcas]
swissprot
ID Q6AT25
description Zinc finger CCCH domain-containing protein 34 OS=Oryza sativa subsp. japonica GN=Os05g0176400 PE=2 SV=1
trembl
ID A0A067K8E7
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_13302 PE=4 SV=1
Gene Ontology
ID GO:0046872
description nucleic acid binding

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_40120: 51625-53767 , PASA_asmbl_40122: 53802-54111
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_004044_050 0.0 transcription factor TF Family: C3H PREDICTED: zinc finger CCCH domain-containing protein 34-like [Jatropha curcas]
2 Hb_022425_030 0.0574869358 - - PREDICTED: casein kinase I [Jatropha curcas]
3 Hb_005214_140 0.06433335 - - PREDICTED: transcription factor GTE2-like [Jatropha curcas]
4 Hb_001329_250 0.0666060936 transcription factor TF Family: C2H2 PREDICTED: uncharacterized protein LOC105642692 isoform X1 [Jatropha curcas]
5 Hb_000347_300 0.0684650912 - - PREDICTED: cation/calcium exchanger 4-like [Jatropha curcas]
6 Hb_000110_350 0.0695432096 - - PREDICTED: ubiquitin receptor RAD23c-like isoform X2 [Gossypium raimondii]
7 Hb_170077_010 0.0700372013 - - PREDICTED: probable ADP-ribosylation factor GTPase-activating protein AGD14 isoform X1 [Jatropha curcas]
8 Hb_001828_170 0.0700874453 - - PREDICTED: protein TPLATE [Jatropha curcas]
9 Hb_002768_050 0.0706482266 - - Beta-1,3-galactosyltransferase sqv-2, putative [Ricinus communis]
10 Hb_000103_290 0.072427853 - - PREDICTED: dymeclin isoform X1 [Jatropha curcas]
11 Hb_000008_240 0.0731231099 - - conserved hypothetical protein [Ricinus communis]
12 Hb_022425_060 0.0737246995 - - PREDICTED: protein phosphatase 2C and cyclic nucleotide-binding/kinase domain-containing protein isoform X1 [Jatropha curcas]
13 Hb_000676_330 0.0737420641 - - protein with unknown function [Ricinus communis]
14 Hb_000270_190 0.075872351 transcription factor TF Family: DDT tRNA ligase, putative [Ricinus communis]
15 Hb_000856_040 0.0759770989 transcription factor TF Family: DDT PREDICTED: uncharacterized protein LOC105640470 [Jatropha curcas]
16 Hb_000206_160 0.076076395 - - PREDICTED: TBCC domain-containing protein 1 [Jatropha curcas]
17 Hb_000494_050 0.0765906666 - - cationic amino acid transporter, putative [Ricinus communis]
18 Hb_003758_010 0.0770814547 transcription factor TF Family: VOZ PREDICTED: transcription factor VOZ1 isoform X1 [Jatropha curcas]
19 Hb_001257_030 0.0771481014 - - PREDICTED: serine/threonine-protein kinase Nek5 [Jatropha curcas]
20 Hb_010407_060 0.0772151731 - - PREDICTED: probable methyltransferase PMT3 [Jatropha curcas]

Gene co-expression network

sample Hb_004044_050 Hb_004044_050 Hb_022425_030 Hb_022425_030 Hb_004044_050--Hb_022425_030 Hb_005214_140 Hb_005214_140 Hb_004044_050--Hb_005214_140 Hb_001329_250 Hb_001329_250 Hb_004044_050--Hb_001329_250 Hb_000347_300 Hb_000347_300 Hb_004044_050--Hb_000347_300 Hb_000110_350 Hb_000110_350 Hb_004044_050--Hb_000110_350 Hb_170077_010 Hb_170077_010 Hb_004044_050--Hb_170077_010 Hb_022425_030--Hb_000347_300 Hb_000008_240 Hb_000008_240 Hb_022425_030--Hb_000008_240 Hb_024650_080 Hb_024650_080 Hb_022425_030--Hb_024650_080 Hb_031527_030 Hb_031527_030 Hb_022425_030--Hb_031527_030 Hb_001828_170 Hb_001828_170 Hb_022425_030--Hb_001828_170 Hb_000270_190 Hb_000270_190 Hb_005214_140--Hb_000270_190 Hb_001257_030 Hb_001257_030 Hb_005214_140--Hb_001257_030 Hb_001817_170 Hb_001817_170 Hb_005214_140--Hb_001817_170 Hb_005214_140--Hb_001329_250 Hb_000103_340 Hb_000103_340 Hb_005214_140--Hb_000103_340 Hb_003498_080 Hb_003498_080 Hb_001329_250--Hb_003498_080 Hb_000212_420 Hb_000212_420 Hb_001329_250--Hb_000212_420 Hb_001329_250--Hb_001828_170 Hb_001329_250--Hb_000270_190 Hb_000347_300--Hb_001828_170 Hb_002817_060 Hb_002817_060 Hb_000347_300--Hb_002817_060 Hb_022425_060 Hb_022425_060 Hb_000347_300--Hb_022425_060 Hb_002686_140 Hb_002686_140 Hb_000347_300--Hb_002686_140 Hb_000110_350--Hb_170077_010 Hb_000179_190 Hb_000179_190 Hb_000110_350--Hb_000179_190 Hb_003929_210 Hb_003929_210 Hb_000110_350--Hb_003929_210 Hb_002768_050 Hb_002768_050 Hb_000110_350--Hb_002768_050 Hb_000445_060 Hb_000445_060 Hb_000110_350--Hb_000445_060 Hb_000996_020 Hb_000996_020 Hb_000110_350--Hb_000996_020 Hb_005403_010 Hb_005403_010 Hb_170077_010--Hb_005403_010 Hb_023344_140 Hb_023344_140 Hb_170077_010--Hb_023344_140 Hb_000358_220 Hb_000358_220 Hb_170077_010--Hb_000358_220 Hb_170077_010--Hb_000996_020 Hb_002461_020 Hb_002461_020 Hb_170077_010--Hb_002461_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
2.68514 6.21116 4.49314 5.15651 3.8091 2.51586
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
2.14385 1.9207 3.39378 3.7789 5.62107

CAGE analysis