Hb_004044_060

Information

Type -
Description -
Location Contig4044: 56532-56846
Sequence    

Annotation

kegg
ID rcu:RCOM_0221110
description hypothetical protein
nr
ID XP_002524464.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID Q9XI29
description Uncharacterized protein At1g15400 OS=Arabidopsis thaliana GN=At1g15400 PE=1 SV=2
trembl
ID B9SEP5
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0221110 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_004044_060 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_000009_260 0.1581379076 - - PREDICTED: probable vacuolar amino acid transporter YPQ1 isoform X1 [Jatropha curcas]
3 Hb_128912_010 0.169328217 - - PREDICTED: probable disease resistance protein At4g27220 [Jatropha curcas]
4 Hb_047923_020 0.1803762237 - - polyprotein [Citrus endogenous pararetrovirus]
5 Hb_003793_020 0.1805174842 - - conserved hypothetical protein [Ricinus communis]
6 Hb_001545_220 0.2001411325 - - hypothetical protein POPTR_0002s06170g [Populus trichocarpa]
7 Hb_004324_410 0.2105748219 - - hypothetical protein JCGZ_26025 [Jatropha curcas]
8 Hb_004041_070 0.2187222521 - - conserved hypothetical protein [Ricinus communis]
9 Hb_002019_030 0.2269245764 - - PREDICTED: probable receptor-like protein kinase At1g67000 [Jatropha curcas]
10 Hb_001903_020 0.2303779265 - - -
11 Hb_004604_020 0.2331682577 - - PREDICTED: uncharacterized protein LOC102581016 [Solanum tuberosum]
12 Hb_000877_090 0.233269539 - - allergenic-related protein Pt2L4 [Manihot esculenta]
13 Hb_124302_030 0.2355481468 - - PREDICTED: serine carboxypeptidase-like [Beta vulgaris subsp. vulgaris]
14 Hb_001080_040 0.2377912615 - - cytochrome P450, putative [Ricinus communis]
15 Hb_012268_010 0.237905975 - - glutamic acid-rich protein [Manihot esculenta]
16 Hb_006418_010 0.2396712693 - - PREDICTED: cytochrome P450 76A1-like [Jatropha curcas]
17 Hb_188168_010 0.2433660506 - - Arylacetamide deacetylase, putative [Ricinus communis]
18 Hb_017987_080 0.2434604173 - - Uncharacterized protein TCM_001832 [Theobroma cacao]
19 Hb_039814_010 0.2446503853 - - hypothetical protein JCGZ_05023 [Jatropha curcas]
20 Hb_135811_020 0.2451762005 - - hypothetical protein JCGZ_19965 [Jatropha curcas]

Gene co-expression network

sample Hb_004044_060 Hb_004044_060 Hb_000009_260 Hb_000009_260 Hb_004044_060--Hb_000009_260 Hb_128912_010 Hb_128912_010 Hb_004044_060--Hb_128912_010 Hb_047923_020 Hb_047923_020 Hb_004044_060--Hb_047923_020 Hb_003793_020 Hb_003793_020 Hb_004044_060--Hb_003793_020 Hb_001545_220 Hb_001545_220 Hb_004044_060--Hb_001545_220 Hb_004324_410 Hb_004324_410 Hb_004044_060--Hb_004324_410 Hb_004041_070 Hb_004041_070 Hb_000009_260--Hb_004041_070 Hb_000009_260--Hb_003793_020 Hb_102408_010 Hb_102408_010 Hb_000009_260--Hb_102408_010 Hb_012278_010 Hb_012278_010 Hb_000009_260--Hb_012278_010 Hb_000009_260--Hb_004324_410 Hb_150643_010 Hb_150643_010 Hb_128912_010--Hb_150643_010 Hb_047690_010 Hb_047690_010 Hb_128912_010--Hb_047690_010 Hb_135811_020 Hb_135811_020 Hb_128912_010--Hb_135811_020 Hb_001487_020 Hb_001487_020 Hb_128912_010--Hb_001487_020 Hb_000532_060 Hb_000532_060 Hb_128912_010--Hb_000532_060 Hb_007785_020 Hb_007785_020 Hb_128912_010--Hb_007785_020 Hb_004604_020 Hb_004604_020 Hb_047923_020--Hb_004604_020 Hb_047923_020--Hb_003793_020 Hb_000438_040 Hb_000438_040 Hb_047923_020--Hb_000438_040 Hb_047923_020--Hb_004041_070 Hb_047923_020--Hb_000009_260 Hb_003793_020--Hb_004041_070 Hb_003793_020--Hb_004604_020 Hb_003793_020--Hb_102408_010 Hb_007627_020 Hb_007627_020 Hb_001545_220--Hb_007627_020 Hb_030602_030 Hb_030602_030 Hb_001545_220--Hb_030602_030 Hb_005673_010 Hb_005673_010 Hb_001545_220--Hb_005673_010 Hb_068533_010 Hb_068533_010 Hb_001545_220--Hb_068533_010 Hb_004458_020 Hb_004458_020 Hb_001545_220--Hb_004458_020 Hb_005211_200 Hb_005211_200 Hb_001545_220--Hb_005211_200 Hb_001363_030 Hb_001363_030 Hb_004324_410--Hb_001363_030 Hb_004970_130 Hb_004970_130 Hb_004324_410--Hb_004970_130 Hb_001365_040 Hb_001365_040 Hb_004324_410--Hb_001365_040 Hb_002025_370 Hb_002025_370 Hb_004324_410--Hb_002025_370 Hb_001810_010 Hb_001810_010 Hb_004324_410--Hb_001810_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
5.95947 357.518 0 7.67551 53.8503 0.261793
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.332023 0 0.380785 152.994 0

CAGE analysis