Hb_004046_010

Information

Type -
Description -
Location Contig4046: 19820-34385
Sequence    

Annotation

kegg
ID rcu:RCOM_2156040
description hypothetical protein
nr
ID XP_012070253.1
description PREDICTED: uncharacterized protein LOC105632478 isoform X2 [Jatropha curcas]
swissprot
ID Q9NRL2
description Bromodomain adjacent to zinc finger domain protein 1A OS=Homo sapiens GN=BAZ1A PE=1 SV=2
trembl
ID A0A067KTJ3
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_02566 PE=4 SV=1
Gene Ontology
ID GO:0003676
description ring fyve phd zinc finger superfamily isoform 2

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_40125: 19904-30434 , PASA_asmbl_40126: 19904-30434 , PASA_asmbl_40127: 21830-22363 , PASA_asmbl_40129: 24192-24380 , PASA_asmbl_40130: 30463-33827 , PASA_asmbl_40132: 34145-34408
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_004046_010 0.0 - - PREDICTED: uncharacterized protein LOC105632478 isoform X2 [Jatropha curcas]
2 Hb_005062_070 0.0615601039 - - RNA splicing protein mrs2, mitochondrial, putative [Ricinus communis]
3 Hb_015306_020 0.0658010262 transcription factor TF Family: MYB-related PREDICTED: dnaJ homolog subfamily C member 2 [Jatropha curcas]
4 Hb_002890_340 0.0661386338 - - PREDICTED: uncharacterized protein LOC105631583 isoform X2 [Jatropha curcas]
5 Hb_002477_160 0.0719710166 - - hypothetical protein L484_013453 [Morus notabilis]
6 Hb_011918_080 0.073398444 - - PREDICTED: probable serine/threonine protein kinase IREH1 isoform X2 [Jatropha curcas]
7 Hb_000446_090 0.0735338889 - - glycine-rich RNA-binding family protein [Populus trichocarpa]
8 Hb_000421_260 0.0796148854 - - PREDICTED: carbamoyl-phosphate synthase large chain, chloroplastic [Jatropha curcas]
9 Hb_003861_080 0.0796961899 - - PREDICTED: DNA polymerase kappa isoform X2 [Jatropha curcas]
10 Hb_001635_100 0.0805444934 - - PREDICTED: dentin sialophosphoprotein isoform X5 [Populus euphratica]
11 Hb_001454_210 0.0806489807 - - PREDICTED: uncharacterized protein LOC105643435 [Jatropha curcas]
12 Hb_000110_160 0.0831288236 - - conserved hypothetical protein [Ricinus communis]
13 Hb_000190_140 0.0832422486 transcription factor TF Family: TRAF PREDICTED: ETO1-like protein 1 [Jatropha curcas]
14 Hb_001047_020 0.0838546493 - - -
15 Hb_002686_270 0.0845097899 - - conserved hypothetical protein [Ricinus communis]
16 Hb_000567_260 0.0853299109 - - BnaA09g41440D [Brassica napus]
17 Hb_001030_120 0.0853352733 - - PREDICTED: tyrosine--tRNA ligase, cytoplasmic-like [Jatropha curcas]
18 Hb_009111_050 0.0867915587 transcription factor TF Family: Jumonji PREDICTED: pentatricopeptide repeat-containing protein At5g06540 [Populus euphratica]
19 Hb_000608_120 0.088030812 - - PREDICTED: uncharacterized protein LOC105644872 [Jatropha curcas]
20 Hb_009382_020 0.0884316555 - - PREDICTED: R3H domain-containing protein 2-like isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_004046_010 Hb_004046_010 Hb_005062_070 Hb_005062_070 Hb_004046_010--Hb_005062_070 Hb_015306_020 Hb_015306_020 Hb_004046_010--Hb_015306_020 Hb_002890_340 Hb_002890_340 Hb_004046_010--Hb_002890_340 Hb_002477_160 Hb_002477_160 Hb_004046_010--Hb_002477_160 Hb_011918_080 Hb_011918_080 Hb_004046_010--Hb_011918_080 Hb_000446_090 Hb_000446_090 Hb_004046_010--Hb_000446_090 Hb_001454_210 Hb_001454_210 Hb_005062_070--Hb_001454_210 Hb_001030_120 Hb_001030_120 Hb_005062_070--Hb_001030_120 Hb_000030_010 Hb_000030_010 Hb_005062_070--Hb_000030_010 Hb_000190_140 Hb_000190_140 Hb_005062_070--Hb_000190_140 Hb_009111_050 Hb_009111_050 Hb_005062_070--Hb_009111_050 Hb_015306_020--Hb_001454_210 Hb_015306_020--Hb_002890_340 Hb_028872_140 Hb_028872_140 Hb_015306_020--Hb_028872_140 Hb_001789_090 Hb_001789_090 Hb_015306_020--Hb_001789_090 Hb_015306_020--Hb_009111_050 Hb_000421_260 Hb_000421_260 Hb_002890_340--Hb_000421_260 Hb_002039_010 Hb_002039_010 Hb_002890_340--Hb_002039_010 Hb_001720_050 Hb_001720_050 Hb_002890_340--Hb_001720_050 Hb_002890_340--Hb_009111_050 Hb_002307_100 Hb_002307_100 Hb_002477_160--Hb_002307_100 Hb_175338_030 Hb_175338_030 Hb_002477_160--Hb_175338_030 Hb_007558_140 Hb_007558_140 Hb_002477_160--Hb_007558_140 Hb_000120_950 Hb_000120_950 Hb_002477_160--Hb_000120_950 Hb_000754_060 Hb_000754_060 Hb_002477_160--Hb_000754_060 Hb_002477_160--Hb_011918_080 Hb_011918_080--Hb_007558_140 Hb_011918_080--Hb_015306_020 Hb_000110_160 Hb_000110_160 Hb_011918_080--Hb_000110_160 Hb_001329_300 Hb_001329_300 Hb_011918_080--Hb_001329_300 Hb_000661_170 Hb_000661_170 Hb_000446_090--Hb_000661_170 Hb_001047_020 Hb_001047_020 Hb_000446_090--Hb_001047_020 Hb_000446_090--Hb_000190_140 Hb_000446_090--Hb_000110_160 Hb_000446_090--Hb_015306_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
95.4044 35.729 9.42537 17.2847 76.736 103.867
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
83.5382 58.479 109.126 34.456 25.8672

CAGE analysis