Hb_004046_020

Information

Type -
Description -
Location Contig4046: 42029-45628
Sequence    

Annotation

kegg
ID pop:POPTR_0019s05890g
description POPTRDRAFT_836071; hypothetical protein
nr
ID XP_012070257.1
description PREDICTED: F-box/kelch-repeat protein At5g60570-like [Jatropha curcas]
swissprot
ID Q9FKJ0
description F-box/kelch-repeat protein At5g60570 OS=Arabidopsis thaliana GN=At5g60570 PE=2 SV=1
trembl
ID A0A067KTQ8
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_02567 PE=4 SV=1
Gene Ontology
ID GO:0005634
description f-box kelch-repeat protein at5g60570-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_40133: 41430-42958 , PASA_asmbl_40134: 43056-45654
cDNA
(Sanger)
(ID:Location)		 021_A09.ab1: 41430-42578 , 029_K12.ab1: 41430-42488

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_004046_020 0.0 - - PREDICTED: F-box/kelch-repeat protein At5g60570-like [Jatropha curcas]
2 Hb_000169_090 0.0818002684 - - PREDICTED: sodium/hydrogen exchanger 2-like [Jatropha curcas]
3 Hb_000898_040 0.092435454 - - ankyrin repeat-containing protein, putative [Ricinus communis]
4 Hb_000928_020 0.1005240302 - - hypothetical protein CICLE_v10013682mg [Citrus clementina]
5 Hb_005054_100 0.101775518 - - PREDICTED: uncharacterized protein At2g39920 [Jatropha curcas]
6 Hb_007545_030 0.1058080639 - - conserved hypothetical protein [Ricinus communis]
7 Hb_002299_060 0.1065773748 transcription factor TF Family: FAR1 PREDICTED: probable receptor-like protein kinase At2g39360 [Jatropha curcas]
8 Hb_000032_100 0.1071254191 - - PREDICTED: hydroquinone glucosyltransferase [Vitis vinifera]
9 Hb_000365_020 0.1074839152 - - Vacuolar sorting receptor 1 precursor, putative [Ricinus communis]
10 Hb_002217_300 0.1092135109 - - PREDICTED: pentatricopeptide repeat-containing protein At3g48810 [Jatropha curcas]
11 Hb_002027_120 0.1099515213 - - PREDICTED: putative E3 ubiquitin-protein ligase RF298 [Jatropha curcas]
12 Hb_005490_030 0.113819551 transcription factor TF Family: FAR1 PREDICTED: protein FAR1-RELATED SEQUENCE 2 isoform X3 [Jatropha curcas]
13 Hb_089032_040 0.1156301159 - - PREDICTED: pentatricopeptide repeat-containing protein At1g80550, mitochondrial [Jatropha curcas]
14 Hb_000832_020 0.1165130466 transcription factor TF Family: B3 hypothetical protein EUGRSUZ_D00268 [Eucalyptus grandis]
15 Hb_000080_190 0.1182218149 - - -
16 Hb_003206_070 0.1184920053 - - organic anion transporter, putative [Ricinus communis]
17 Hb_000620_010 0.118879467 - - PREDICTED: ALA-interacting subunit 3-like [Jatropha curcas]
18 Hb_001009_170 0.1191975474 - - Anthranilate N-benzoyltransferase protein, putative [Ricinus communis]
19 Hb_028089_010 0.1197031614 - - PREDICTED: homoserine dehydrogenase [Jatropha curcas]
20 Hb_000409_020 0.1202826951 - - PREDICTED: V-type proton ATPase subunit d2 [Jatropha curcas]

Gene co-expression network

sample Hb_004046_020 Hb_004046_020 Hb_000169_090 Hb_000169_090 Hb_004046_020--Hb_000169_090 Hb_000898_040 Hb_000898_040 Hb_004046_020--Hb_000898_040 Hb_000928_020 Hb_000928_020 Hb_004046_020--Hb_000928_020 Hb_005054_100 Hb_005054_100 Hb_004046_020--Hb_005054_100 Hb_007545_030 Hb_007545_030 Hb_004046_020--Hb_007545_030 Hb_002299_060 Hb_002299_060 Hb_004046_020--Hb_002299_060 Hb_000169_090--Hb_005054_100 Hb_001344_010 Hb_001344_010 Hb_000169_090--Hb_001344_010 Hb_003195_070 Hb_003195_070 Hb_000169_090--Hb_003195_070 Hb_000169_090--Hb_000898_040 Hb_003206_070 Hb_003206_070 Hb_000169_090--Hb_003206_070 Hb_000409_020 Hb_000409_020 Hb_000898_040--Hb_000409_020 Hb_002217_300 Hb_002217_300 Hb_000898_040--Hb_002217_300 Hb_000207_250 Hb_000207_250 Hb_000898_040--Hb_000207_250 Hb_000907_080 Hb_000907_080 Hb_000898_040--Hb_000907_080 Hb_004109_090 Hb_004109_090 Hb_000898_040--Hb_004109_090 Hb_000080_190 Hb_000080_190 Hb_000898_040--Hb_000080_190 Hb_000096_010 Hb_000096_010 Hb_000928_020--Hb_000096_010 Hb_000928_020--Hb_003206_070 Hb_000749_220 Hb_000749_220 Hb_000928_020--Hb_000749_220 Hb_000138_110 Hb_000138_110 Hb_000928_020--Hb_000138_110 Hb_003177_030 Hb_003177_030 Hb_000928_020--Hb_003177_030 Hb_002811_060 Hb_002811_060 Hb_005054_100--Hb_002811_060 Hb_002740_180 Hb_002740_180 Hb_005054_100--Hb_002740_180 Hb_012022_090 Hb_012022_090 Hb_005054_100--Hb_012022_090 Hb_005490_030 Hb_005490_030 Hb_005054_100--Hb_005490_030 Hb_023001_060 Hb_023001_060 Hb_005054_100--Hb_023001_060 Hb_000739_310 Hb_000739_310 Hb_007545_030--Hb_000739_310 Hb_024570_010 Hb_024570_010 Hb_007545_030--Hb_024570_010 Hb_000261_350 Hb_000261_350 Hb_007545_030--Hb_000261_350 Hb_001019_190 Hb_001019_190 Hb_007545_030--Hb_001019_190 Hb_028089_010 Hb_028089_010 Hb_007545_030--Hb_028089_010 Hb_000032_100 Hb_000032_100 Hb_007545_030--Hb_000032_100 Hb_002299_060--Hb_000898_040 Hb_001085_170 Hb_001085_170 Hb_002299_060--Hb_001085_170 Hb_007558_140 Hb_007558_140 Hb_002299_060--Hb_007558_140 Hb_000997_210 Hb_000997_210 Hb_002299_060--Hb_000997_210 Hb_002299_060--Hb_002217_300 Hb_089032_040 Hb_089032_040 Hb_002299_060--Hb_089032_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
14.6432 3.60724 2.63156 8.54351 12.0512 11.8163
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
8.99061 6.54516 18.9398 10.0483 7.03126

CAGE analysis