Hb_004046_040

Information

Type transcription factor
Description TF Family: GRF
Location Contig4046: 60204-65826
Sequence    

Annotation

kegg
ID cic:CICLE_v10032065mg
description hypothetical protein
nr
ID XP_012070259.1
description PREDICTED: growth-regulating factor 4-like [Jatropha curcas]
swissprot
ID Q6AWY6
description Growth-regulating factor 3 OS=Oryza sativa subsp. japonica GN=GRF3 PE=3 SV=2
trembl
ID A0A067L625
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_02569 PE=4 SV=1
Gene Ontology
ID GO:0005634
description growth-regulating factor 4-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_40137: 60515-64237
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_004046_040 0.0 transcription factor TF Family: GRF PREDICTED: growth-regulating factor 4-like [Jatropha curcas]
2 Hb_006096_040 0.0572107315 - - PREDICTED: COP9 signalosome complex subunit 8 [Jatropha curcas]
3 Hb_006501_150 0.1027876224 - - conserved hypothetical protein [Ricinus communis]
4 Hb_005545_030 0.1066137925 - - PREDICTED: uncharacterized protein LOC105645697 [Jatropha curcas]
5 Hb_000789_090 0.1115848248 - - hypothetical protein 17 [Hevea brasiliensis]
6 Hb_002681_040 0.113104714 - - PREDICTED: ribosomal RNA-processing protein 8 [Jatropha curcas]
7 Hb_001405_050 0.1132497492 - - PREDICTED: uncharacterized protein LOC100500641 [Glycine max]
8 Hb_143766_090 0.1192183789 - - 60S ribosomal protein L31B [Hevea brasiliensis]
9 Hb_003688_100 0.1219443395 - - Uncharacterized protein TCM_002515 [Theobroma cacao]
10 Hb_000307_170 0.1256165279 - - PREDICTED: uncharacterized protein LOC105638528 [Jatropha curcas]
11 Hb_000538_020 0.1264821884 - - PREDICTED: autophagy protein 5 [Jatropha curcas]
12 Hb_002687_140 0.126600934 - - hypothetical protein JCGZ_24463 [Jatropha curcas]
13 Hb_000933_150 0.1266223008 - - PREDICTED: mitotic checkpoint protein BUB3.3 isoform X1 [Jatropha curcas]
14 Hb_000270_360 0.1293474715 - - PREDICTED: serine/threonine-protein kinase pakF-like [Jatropha curcas]
15 Hb_001158_040 0.1296640642 - - PREDICTED: SWI/SNF complex subunit SWI3A isoform X2 [Jatropha curcas]
16 Hb_006452_190 0.1298901782 - - PREDICTED: 3-isopropylmalate dehydrogenase 2, chloroplastic-like [Jatropha curcas]
17 Hb_005714_040 0.131634788 - - conserved hypothetical protein [Ricinus communis]
18 Hb_001514_020 0.1316787706 - - PREDICTED: protein DCL, chloroplastic-like [Jatropha curcas]
19 Hb_012675_090 0.1333756671 - - PREDICTED: DNA-directed RNA polymerase II subunit 4-like isoform X1 [Citrus sinensis]
20 Hb_001348_070 0.1344521162 - - Uncharacterized protein isoform 1 [Theobroma cacao]

Gene co-expression network

sample Hb_004046_040 Hb_004046_040 Hb_006096_040 Hb_006096_040 Hb_004046_040--Hb_006096_040 Hb_006501_150 Hb_006501_150 Hb_004046_040--Hb_006501_150 Hb_005545_030 Hb_005545_030 Hb_004046_040--Hb_005545_030 Hb_000789_090 Hb_000789_090 Hb_004046_040--Hb_000789_090 Hb_002681_040 Hb_002681_040 Hb_004046_040--Hb_002681_040 Hb_001405_050 Hb_001405_050 Hb_004046_040--Hb_001405_050 Hb_000933_150 Hb_000933_150 Hb_006096_040--Hb_000933_150 Hb_000676_050 Hb_000676_050 Hb_006096_040--Hb_000676_050 Hb_002687_140 Hb_002687_140 Hb_006096_040--Hb_002687_140 Hb_000482_110 Hb_000482_110 Hb_006096_040--Hb_000482_110 Hb_000331_290 Hb_000331_290 Hb_006096_040--Hb_000331_290 Hb_143766_090 Hb_143766_090 Hb_006501_150--Hb_143766_090 Hb_001514_020 Hb_001514_020 Hb_006501_150--Hb_001514_020 Hb_005333_040 Hb_005333_040 Hb_006501_150--Hb_005333_040 Hb_004502_030 Hb_004502_030 Hb_006501_150--Hb_004502_030 Hb_033080_010 Hb_033080_010 Hb_006501_150--Hb_033080_010 Hb_000183_070 Hb_000183_070 Hb_006501_150--Hb_000183_070 Hb_005545_030--Hb_002681_040 Hb_003018_110 Hb_003018_110 Hb_005545_030--Hb_003018_110 Hb_006452_190 Hb_006452_190 Hb_005545_030--Hb_006452_190 Hb_005545_030--Hb_006096_040 Hb_005545_030--Hb_001405_050 Hb_002284_090 Hb_002284_090 Hb_000789_090--Hb_002284_090 Hb_000699_130 Hb_000699_130 Hb_000789_090--Hb_000699_130 Hb_000438_170 Hb_000438_170 Hb_000789_090--Hb_000438_170 Hb_012675_090 Hb_012675_090 Hb_000789_090--Hb_012675_090 Hb_001124_120 Hb_001124_120 Hb_000789_090--Hb_001124_120 Hb_002681_040--Hb_001405_050 Hb_010449_020 Hb_010449_020 Hb_002681_040--Hb_010449_020 Hb_000768_050 Hb_000768_050 Hb_002681_040--Hb_000768_050 Hb_003688_100 Hb_003688_100 Hb_002681_040--Hb_003688_100 Hb_000680_150 Hb_000680_150 Hb_002681_040--Hb_000680_150 Hb_001405_050--Hb_143766_090 Hb_001776_090 Hb_001776_090 Hb_001405_050--Hb_001776_090 Hb_019962_030 Hb_019962_030 Hb_001405_050--Hb_019962_030 Hb_004204_070 Hb_004204_070 Hb_001405_050--Hb_004204_070 Hb_000538_020 Hb_000538_020 Hb_001405_050--Hb_000538_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
10.6831 2.04113 4.35628 1.0007 11.6165 5.42856
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
10.6818 8.29265 2.21951 2.52609 0.897409

CAGE analysis