Hb_004046_050

Information

Type -
Description -
Location Contig4046: 73032-88853
Sequence    

Annotation

kegg
ID rcu:RCOM_1328210
description origin recognition complex subunit, putative
nr
ID XP_012070261.1
description PREDICTED: origin of replication complex subunit 3 [Jatropha curcas]
swissprot
ID Q6E7H0
description Origin of replication complex subunit 3 OS=Arabidopsis thaliana GN=ORC3 PE=1 SV=1
trembl
ID A0A067L4W6
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_02570 PE=4 SV=1
Gene Ontology
ID GO:0005664
description origin recognition complex subunit 3

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_40139: 75511-76900 , PASA_asmbl_40140: 77101-79914 , PASA_asmbl_40141: 86226-87918 , PASA_asmbl_40142: 88658-88923 , PASA_asmbl_40143: 87804-88923
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_004046_050 0.0 - - PREDICTED: origin of replication complex subunit 3 [Jatropha curcas]
2 Hb_003693_070 0.0709736383 - - PREDICTED: S-(hydroxymethyl)glutathione dehydrogenase [Jatropha curcas]
3 Hb_000020_150 0.0759590711 - - PREDICTED: uncharacterized protein LOC105636325 [Jatropha curcas]
4 Hb_000345_380 0.0821590664 - - PREDICTED: long chain acyl-CoA synthetase 7, peroxisomal [Jatropha curcas]
5 Hb_000039_220 0.082902233 - - PREDICTED: vesicle-associated protein 4-2-like [Gossypium raimondii]
6 Hb_006827_020 0.0829560733 - - conserved hypothetical protein [Ricinus communis]
7 Hb_001221_100 0.0832798576 - - PREDICTED: elongation factor 1-delta 1-like [Citrus sinensis]
8 Hb_063716_100 0.084027059 - - PREDICTED: DEAD-box ATP-dependent RNA helicase 56-like isoform X2 [Jatropha curcas]
9 Hb_014497_050 0.0841135317 transcription factor TF Family: bZIP hypothetical protein JCGZ_08021 [Jatropha curcas]
10 Hb_003549_150 0.0850847495 - - clathrin coat adaptor ap3 medium chain, putative [Ricinus communis]
11 Hb_000351_120 0.0856201161 - - hypothetical protein POPTR_0013s10290g [Populus trichocarpa]
12 Hb_000808_270 0.0856431123 - - PREDICTED: lon protease homolog 1, mitochondrial [Jatropha curcas]
13 Hb_002197_020 0.0858782129 - - DNA-directed RNA polymerase family protein [Theobroma cacao]
14 Hb_000030_190 0.0863511486 - - PREDICTED: TATA-box-binding protein-like isoform X1 [Citrus sinensis]
15 Hb_000221_250 0.0865667817 - - hypothetical protein JCGZ_15814 [Jatropha curcas]
16 Hb_010417_080 0.0866065224 - - PREDICTED: uncharacterized protein LOC105645742 isoform X1 [Jatropha curcas]
17 Hb_005357_080 0.0868670983 - - PREDICTED: tyrosyl-DNA phosphodiesterase 1 [Jatropha curcas]
18 Hb_002303_070 0.0873931428 - - PREDICTED: uncharacterized RNA-binding protein C1827.05c [Jatropha curcas]
19 Hb_004055_030 0.0877871659 - - casein kinase, putative [Ricinus communis]
20 Hb_007317_110 0.0883038877 - - PREDICTED: uncharacterized RNA-binding protein C660.15-like [Jatropha curcas]

Gene co-expression network

sample Hb_004046_050 Hb_004046_050 Hb_003693_070 Hb_003693_070 Hb_004046_050--Hb_003693_070 Hb_000020_150 Hb_000020_150 Hb_004046_050--Hb_000020_150 Hb_000345_380 Hb_000345_380 Hb_004046_050--Hb_000345_380 Hb_000039_220 Hb_000039_220 Hb_004046_050--Hb_000039_220 Hb_006827_020 Hb_006827_020 Hb_004046_050--Hb_006827_020 Hb_001221_100 Hb_001221_100 Hb_004046_050--Hb_001221_100 Hb_000120_060 Hb_000120_060 Hb_003693_070--Hb_000120_060 Hb_010142_030 Hb_010142_030 Hb_003693_070--Hb_010142_030 Hb_000808_280 Hb_000808_280 Hb_003693_070--Hb_000808_280 Hb_000205_300 Hb_000205_300 Hb_003693_070--Hb_000205_300 Hb_000019_030 Hb_000019_030 Hb_003693_070--Hb_000019_030 Hb_028872_090 Hb_028872_090 Hb_000020_150--Hb_028872_090 Hb_000120_430 Hb_000120_430 Hb_000020_150--Hb_000120_430 Hb_063716_100 Hb_063716_100 Hb_000020_150--Hb_063716_100 Hb_000221_250 Hb_000221_250 Hb_000020_150--Hb_000221_250 Hb_033834_030 Hb_033834_030 Hb_000020_150--Hb_033834_030 Hb_183612_040 Hb_183612_040 Hb_000020_150--Hb_183612_040 Hb_105328_020 Hb_105328_020 Hb_000345_380--Hb_105328_020 Hb_011037_030 Hb_011037_030 Hb_000345_380--Hb_011037_030 Hb_000030_190 Hb_000030_190 Hb_000345_380--Hb_000030_190 Hb_000789_310 Hb_000789_310 Hb_000345_380--Hb_000789_310 Hb_008406_200 Hb_008406_200 Hb_000345_380--Hb_008406_200 Hb_001409_020 Hb_001409_020 Hb_000345_380--Hb_001409_020 Hb_001133_120 Hb_001133_120 Hb_000039_220--Hb_001133_120 Hb_000768_090 Hb_000768_090 Hb_000039_220--Hb_000768_090 Hb_002303_070 Hb_002303_070 Hb_000039_220--Hb_002303_070 Hb_000317_240 Hb_000317_240 Hb_000039_220--Hb_000317_240 Hb_002197_020 Hb_002197_020 Hb_000039_220--Hb_002197_020 Hb_001357_350 Hb_001357_350 Hb_000039_220--Hb_001357_350 Hb_007317_110 Hb_007317_110 Hb_006827_020--Hb_007317_110 Hb_000808_270 Hb_000808_270 Hb_006827_020--Hb_000808_270 Hb_007059_010 Hb_007059_010 Hb_006827_020--Hb_007059_010 Hb_000538_100 Hb_000538_100 Hb_006827_020--Hb_000538_100 Hb_000011_200 Hb_000011_200 Hb_006827_020--Hb_000011_200 Hb_003813_130 Hb_003813_130 Hb_006827_020--Hb_003813_130 Hb_005291_030 Hb_005291_030 Hb_001221_100--Hb_005291_030 Hb_001221_100--Hb_002303_070 Hb_005730_120 Hb_005730_120 Hb_001221_100--Hb_005730_120 Hb_010417_080 Hb_010417_080 Hb_001221_100--Hb_010417_080 Hb_024071_020 Hb_024071_020 Hb_001221_100--Hb_024071_020 Hb_003126_050 Hb_003126_050 Hb_001221_100--Hb_003126_050
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.892669 0.639158 0.828682 0.698557 0.776883 1.16415
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.07846 0.713927 0.770843 0.919854 0.286514

CAGE analysis