Hb_004048_010

Information

Type -
Description -
Location Contig4048: 1676-2854
Sequence    

Annotation

kegg
ID cit:102630519
description probable LRR receptor-like serine/threonine-protein kinase At3g47570-like
nr
ID XP_006493621.1
description PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At3g47570-like [Citrus sinensis]
swissprot
ID Q9SKB2
description Leucine-rich repeat receptor-like serine/threonine/tyrosine-protein kinase SOBIR1 OS=Arabidopsis thaliana GN=SOBIR1 PE=1 SV=1
trembl
ID M1CRK1
description Uncharacterized protein OS=Solanum tuberosum GN=PGSC0003DMG400028437 PE=3 SV=1
Gene Ontology
ID GO:0016301
description probable lrr receptor-like serine threonine-protein kinase at3g47570-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_004048_010 0.0 - - PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At3g47570-like [Citrus sinensis]
2 Hb_001405_130 0.188432471 - - PREDICTED: uncharacterized protein LOC102587892 [Solanum tuberosum]
3 Hb_029982_010 0.193237194 - - hypothetical protein CICLE_v10006145mg [Citrus clementina]
4 Hb_000134_020 0.1947046128 - - thioredoxin-like family protein [Hevea brasiliensis]
5 Hb_003638_080 0.1991910651 - - hypothetical protein POPTR_0006s13340g [Populus trichocarpa]
6 Hb_005199_010 0.2004233791 - - conserved hypothetical protein [Ricinus communis]
7 Hb_029888_020 0.2009067036 - - hypothetical protein PHAVU_007G268100g [Phaseolus vulgaris]
8 Hb_004958_050 0.2022603743 - - hypothetical protein CICLE_v10032980mg [Citrus clementina]
9 Hb_002293_030 0.2036874309 - - eukaryotic translation initiation factor 5A isoform VI [Hevea brasiliensis]
10 Hb_005463_060 0.2041045951 - - PREDICTED: uncharacterized protein LOC105632515 [Jatropha curcas]
11 Hb_011310_060 0.2067880502 - - PREDICTED: uncharacterized protein At2g34160-like [Jatropha curcas]
12 Hb_151930_020 0.2079920605 - - Wound-induced protein WIN1 precursor, putative [Ricinus communis]
13 Hb_001143_010 0.2081035464 - - -
14 Hb_000562_080 0.2090762089 - - conserved hypothetical protein [Ricinus communis]
15 Hb_150299_030 0.2127543517 - - conserved hypothetical protein [Ricinus communis]
16 Hb_003029_080 0.2138623552 - - peptidyl-prolyl cis-trans isomerase, putative [Ricinus communis]
17 Hb_000122_040 0.2143874586 - - PREDICTED: uncharacterized protein LOC105649224 [Jatropha curcas]
18 Hb_000453_210 0.2158246275 - - hypothetical protein PHAVU_006G019800g [Phaseolus vulgaris]
19 Hb_003405_060 0.2171093447 - - -
20 Hb_001821_120 0.2178429079 - - PREDICTED: uncharacterized protein LOC105643956 [Jatropha curcas]

Gene co-expression network

sample Hb_004048_010 Hb_004048_010 Hb_001405_130 Hb_001405_130 Hb_004048_010--Hb_001405_130 Hb_029982_010 Hb_029982_010 Hb_004048_010--Hb_029982_010 Hb_000134_020 Hb_000134_020 Hb_004048_010--Hb_000134_020 Hb_003638_080 Hb_003638_080 Hb_004048_010--Hb_003638_080 Hb_005199_010 Hb_005199_010 Hb_004048_010--Hb_005199_010 Hb_029888_020 Hb_029888_020 Hb_004048_010--Hb_029888_020 Hb_000562_080 Hb_000562_080 Hb_001405_130--Hb_000562_080 Hb_013492_010 Hb_013492_010 Hb_001405_130--Hb_013492_010 Hb_008442_010 Hb_008442_010 Hb_001405_130--Hb_008442_010 Hb_001405_130--Hb_005199_010 Hb_003405_060 Hb_003405_060 Hb_001405_130--Hb_003405_060 Hb_086859_010 Hb_086859_010 Hb_029982_010--Hb_086859_010 Hb_042404_010 Hb_042404_010 Hb_029982_010--Hb_042404_010 Hb_188382_010 Hb_188382_010 Hb_029982_010--Hb_188382_010 Hb_029982_010--Hb_001405_130 Hb_142522_010 Hb_142522_010 Hb_029982_010--Hb_142522_010 Hb_000645_190 Hb_000645_190 Hb_000134_020--Hb_000645_190 Hb_011310_060 Hb_011310_060 Hb_000134_020--Hb_011310_060 Hb_003988_040 Hb_003988_040 Hb_000134_020--Hb_003988_040 Hb_002293_030 Hb_002293_030 Hb_000134_020--Hb_002293_030 Hb_003058_220 Hb_003058_220 Hb_000134_020--Hb_003058_220 Hb_000134_020--Hb_003638_080 Hb_000699_040 Hb_000699_040 Hb_003638_080--Hb_000699_040 Hb_000236_460 Hb_000236_460 Hb_003638_080--Hb_000236_460 Hb_000617_050 Hb_000617_050 Hb_003638_080--Hb_000617_050 Hb_001053_160 Hb_001053_160 Hb_003638_080--Hb_001053_160 Hb_001214_140 Hb_001214_140 Hb_003638_080--Hb_001214_140 Hb_109578_010 Hb_109578_010 Hb_005199_010--Hb_109578_010 Hb_000275_010 Hb_000275_010 Hb_005199_010--Hb_000275_010 Hb_000345_430 Hb_000345_430 Hb_005199_010--Hb_000345_430 Hb_007765_120 Hb_007765_120 Hb_005199_010--Hb_007765_120 Hb_086703_010 Hb_086703_010 Hb_029888_020--Hb_086703_010 Hb_004807_060 Hb_004807_060 Hb_029888_020--Hb_004807_060 Hb_003746_060 Hb_003746_060 Hb_029888_020--Hb_003746_060 Hb_000193_350 Hb_000193_350 Hb_029888_020--Hb_000193_350 Hb_017711_010 Hb_017711_010 Hb_029888_020--Hb_017711_010 Hb_004502_080 Hb_004502_080 Hb_029888_020--Hb_004502_080
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.904247 0.2279 0.176278 0.428482 0.801866 1.13593
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
2.18836 4.05688 0.0753144 0 0.0836962

CAGE analysis