Hb_004048_050

Information

Type -
Description -
Location Contig4048: 32623-43414
Sequence    

Annotation

kegg
ID cit:102607237
description probable LRR receptor-like serine/threonine-protein kinase At3g47570-like
nr
ID XP_006476119.1
description PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At3g47570-like [Citrus sinensis]
swissprot
ID C0LGP4
description Probable LRR receptor-like serine/threonine-protein kinase At3g47570 OS=Arabidopsis thaliana GN=At3g47570 PE=2 SV=1
trembl
ID A0A067GCT3
description Uncharacterized protein (Fragment) OS=Citrus sinensis GN=CISIN_1g039290mg PE=4 SV=1
Gene Ontology
ID GO:0016301
description leucine-rich repeat protein kinase family

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_40147: 32997-33595
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_004048_050 0.0 - - PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At3g47570-like [Citrus sinensis]
2 Hb_009265_060 0.0954515254 - - PREDICTED: pyruvate kinase, cytosolic isozyme [Jatropha curcas]
3 Hb_012573_030 0.1099109034 - - conserved hypothetical protein [Ricinus communis]
4 Hb_054865_130 0.1236007904 - - acyltransferase, putative [Ricinus communis]
5 Hb_024714_060 0.127195626 - - PREDICTED: thiamine pyrophosphokinase 1 isoform X1 [Jatropha curcas]
6 Hb_171554_080 0.1344025229 - - PREDICTED: uncharacterized protein At1g04910 [Jatropha curcas]
7 Hb_012725_110 0.144194941 - - hypothetical protein JCGZ_09397 [Jatropha curcas]
8 Hb_000742_270 0.1471175216 - - PREDICTED: fatty acid 2-hydroxylase 1-like [Jatropha curcas]
9 Hb_001006_180 0.1483651556 - - PREDICTED: endonuclease V-like [Jatropha curcas]
10 Hb_000249_090 0.1514051688 - - PREDICTED: triacylglycerol lipase SDP1 [Jatropha curcas]
11 Hb_000003_840 0.1540187275 - - multidrug/pheromone exporter protein [Hevea brasiliensis]
12 Hb_007429_030 0.1547064625 - - PREDICTED: probable serine/threonine-protein kinase At1g54610 isoform X1 [Jatropha curcas]
13 Hb_002685_090 0.155639624 transcription factor TF Family: C2C2-Dof hypothetical protein POPTR_0004s04590g [Populus trichocarpa]
14 Hb_002936_050 0.1567303086 transcription factor TF Family: ARR-B PREDICTED: two-component response regulator ARR18 isoform X2 [Jatropha curcas]
15 Hb_012423_050 0.1588588577 - - PREDICTED: transmembrane protein 64 [Jatropha curcas]
16 Hb_000012_230 0.1592283807 - - PREDICTED: uncharacterized protein LOC105629874 [Jatropha curcas]
17 Hb_004077_030 0.16082495 - - hypothetical protein EUGRSUZ_K01571 [Eucalyptus grandis]
18 Hb_002291_030 0.1631768519 - - PREDICTED: vesicle transport protein SFT2B [Jatropha curcas]
19 Hb_012522_030 0.1638895967 - - ankyrin repeat-containing protein, putative [Ricinus communis]
20 Hb_001268_080 0.1640247877 - - catalytic, putative [Ricinus communis]

Gene co-expression network

sample Hb_004048_050 Hb_004048_050 Hb_009265_060 Hb_009265_060 Hb_004048_050--Hb_009265_060 Hb_012573_030 Hb_012573_030 Hb_004048_050--Hb_012573_030 Hb_054865_130 Hb_054865_130 Hb_004048_050--Hb_054865_130 Hb_024714_060 Hb_024714_060 Hb_004048_050--Hb_024714_060 Hb_171554_080 Hb_171554_080 Hb_004048_050--Hb_171554_080 Hb_012725_110 Hb_012725_110 Hb_004048_050--Hb_012725_110 Hb_009265_060--Hb_024714_060 Hb_009265_060--Hb_012573_030 Hb_009265_060--Hb_171554_080 Hb_000419_040 Hb_000419_040 Hb_009265_060--Hb_000419_040 Hb_001006_180 Hb_001006_180 Hb_009265_060--Hb_001006_180 Hb_012573_030--Hb_171554_080 Hb_012573_030--Hb_054865_130 Hb_012573_030--Hb_001006_180 Hb_012573_030--Hb_024714_060 Hb_054865_130--Hb_171554_080 Hb_054865_130--Hb_009265_060 Hb_005463_020 Hb_005463_020 Hb_054865_130--Hb_005463_020 Hb_003020_310 Hb_003020_310 Hb_054865_130--Hb_003020_310 Hb_024714_060--Hb_001006_180 Hb_000012_130 Hb_000012_130 Hb_024714_060--Hb_000012_130 Hb_001762_060 Hb_001762_060 Hb_024714_060--Hb_001762_060 Hb_007594_120 Hb_007594_120 Hb_024714_060--Hb_007594_120 Hb_006831_030 Hb_006831_030 Hb_024714_060--Hb_006831_030 Hb_001863_480 Hb_001863_480 Hb_171554_080--Hb_001863_480 Hb_012522_030 Hb_012522_030 Hb_171554_080--Hb_012522_030 Hb_171554_080--Hb_000419_040 Hb_004206_030 Hb_004206_030 Hb_012725_110--Hb_004206_030 Hb_002387_060 Hb_002387_060 Hb_012725_110--Hb_002387_060 Hb_002685_090 Hb_002685_090 Hb_012725_110--Hb_002685_090 Hb_000041_070 Hb_000041_070 Hb_012725_110--Hb_000041_070 Hb_000836_500 Hb_000836_500 Hb_012725_110--Hb_000836_500 Hb_002291_030 Hb_002291_030 Hb_012725_110--Hb_002291_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.42236 0.128894 0.197159 0.337029 0.233002 0.669895
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
2.20276 1.54086 3.25031 0.255697 0.0206029

CAGE analysis