Hb_004048_080

Information

Type -
Description -
Location Contig4048: 79942-80835
Sequence    

Annotation

kegg
ID pop:POPTR_0001s40360g
description hypothetical protein
nr
ID XP_006370173.1
description hypothetical protein POPTR_0001s40360g [Populus trichocarpa]
swissprot
ID -
description -
trembl
ID U5GXD7
description Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0001s40360g PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_40152: 79985-80592
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_004048_080 0.0 - - hypothetical protein POPTR_0001s40360g [Populus trichocarpa]
2 Hb_001862_040 0.0609306579 - - heat shock protein 70 (HSP70)-interacting protein, putative [Ricinus communis]
3 Hb_000948_240 0.06641898 - - conserved hypothetical protein [Ricinus communis]
4 Hb_003032_080 0.0664323821 - - conserved hypothetical protein [Ricinus communis]
5 Hb_000703_340 0.0665530453 - - Oxygen-evolving enhancer protein 2, chloroplast precursor, putative [Ricinus communis]
6 Hb_002592_040 0.0706219368 - - ACC oxidase 3 [Hevea brasiliensis]
7 Hb_002014_150 0.0710559581 - - monooxygenase, putative [Ricinus communis]
8 Hb_013405_110 0.0719624342 - - multidrug resistance pump, putative [Ricinus communis]
9 Hb_002400_200 0.0735307704 - - 14 kDa proline-rich protein DC2.15 precursor, putative [Ricinus communis]
10 Hb_163566_020 0.0735601767 - - PREDICTED: peptidyl-prolyl cis-trans isomerase FKBP17-1, chloroplastic isoform X2 [Jatropha curcas]
11 Hb_082402_020 0.0740221186 - - PREDICTED: aluminum-activated malate transporter 8-like [Jatropha curcas]
12 Hb_001936_100 0.0747606252 - - conserved hypothetical protein [Ricinus communis]
13 Hb_003038_060 0.0756210906 - - hypothetical protein POPTR_0007s13050g [Populus trichocarpa]
14 Hb_002890_170 0.0790040811 transcription factor TF Family: zf-HD PREDICTED: zinc-finger homeodomain protein 4-like [Populus euphratica]
15 Hb_005375_090 0.0792923466 - - PREDICTED: protein CURVATURE THYLAKOID 1B, chloroplastic [Jatropha curcas]
16 Hb_003747_090 0.0809896088 - - PREDICTED: glyceraldehyde-3-phosphate dehydrogenase A, chloroplastic isoform X2 [Jatropha curcas]
17 Hb_010288_070 0.0823642558 transcription factor TF Family: MYB MYB-like DNA-binding domain protein [Theobroma cacao]
18 Hb_000254_020 0.0863341098 - - hypothetical protein CISIN_1g007892mg [Citrus sinensis]
19 Hb_004899_190 0.0872435609 - - RecName: Full=Peroxiredoxin Q, chloroplastic; AltName: Full=Thioredoxin reductase; Flags: Precursor [Populus x jackii]
20 Hb_074312_010 0.0873599089 - - PREDICTED: cytochrome P450 82A3-like [Jatropha curcas]

Gene co-expression network

sample Hb_004048_080 Hb_004048_080 Hb_001862_040 Hb_001862_040 Hb_004048_080--Hb_001862_040 Hb_000948_240 Hb_000948_240 Hb_004048_080--Hb_000948_240 Hb_003032_080 Hb_003032_080 Hb_004048_080--Hb_003032_080 Hb_000703_340 Hb_000703_340 Hb_004048_080--Hb_000703_340 Hb_002592_040 Hb_002592_040 Hb_004048_080--Hb_002592_040 Hb_002014_150 Hb_002014_150 Hb_004048_080--Hb_002014_150 Hb_001862_040--Hb_003032_080 Hb_082402_020 Hb_082402_020 Hb_001862_040--Hb_082402_020 Hb_001862_040--Hb_000948_240 Hb_002890_170 Hb_002890_170 Hb_001862_040--Hb_002890_170 Hb_001862_040--Hb_002014_150 Hb_003050_380 Hb_003050_380 Hb_001862_040--Hb_003050_380 Hb_000948_240--Hb_002592_040 Hb_005375_090 Hb_005375_090 Hb_000948_240--Hb_005375_090 Hb_003747_090 Hb_003747_090 Hb_000948_240--Hb_003747_090 Hb_000334_290 Hb_000334_290 Hb_000948_240--Hb_000334_290 Hb_013405_110 Hb_013405_110 Hb_000948_240--Hb_013405_110 Hb_003032_080--Hb_002014_150 Hb_010288_070 Hb_010288_070 Hb_003032_080--Hb_010288_070 Hb_163566_020 Hb_163566_020 Hb_003032_080--Hb_163566_020 Hb_005610_070 Hb_005610_070 Hb_003032_080--Hb_005610_070 Hb_074312_010 Hb_074312_010 Hb_003032_080--Hb_074312_010 Hb_001936_100 Hb_001936_100 Hb_000703_340--Hb_001936_100 Hb_000703_340--Hb_002014_150 Hb_000703_340--Hb_163566_020 Hb_002400_200 Hb_002400_200 Hb_000703_340--Hb_002400_200 Hb_000139_170 Hb_000139_170 Hb_000703_340--Hb_000139_170 Hb_005743_050 Hb_005743_050 Hb_000703_340--Hb_005743_050 Hb_002592_040--Hb_013405_110 Hb_002592_040--Hb_005375_090 Hb_001006_160 Hb_001006_160 Hb_002592_040--Hb_001006_160 Hb_002592_040--Hb_001862_040 Hb_002592_040--Hb_003747_090 Hb_002014_150--Hb_163566_020 Hb_002014_150--Hb_074312_010 Hb_002014_150--Hb_005610_070 Hb_011382_010 Hb_011382_010 Hb_002014_150--Hb_011382_010 Hb_002014_150--Hb_010288_070
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 6.58557 2.26443 0.0718304 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0.0648912 0 0 11.2736

CAGE analysis