Hb_004048_090

Information

Type -
Description -
Location Contig4048: 82111-83490
Sequence    

Annotation

kegg
ID rcu:RCOM_1016750
description pentatricopeptide repeat-containing protein, putative
nr
ID XP_012075825.1
description PREDICTED: putative pentatricopeptide repeat-containing protein At1g53330 [Jatropha curcas]
swissprot
ID Q9MAG8
description Putative pentatricopeptide repeat-containing protein At1g53330 OS=Arabidopsis thaliana GN=At1g53330 PE=3 SV=1
trembl
ID B9STL7
description Pentatricopeptide repeat-containing protein, putative OS=Ricinus communis GN=RCOM_1016750 PE=4 SV=1
Gene Ontology
ID GO:0009790
description pentatricopeptide repeat-containing protein at1g53330

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_004048_090 0.0 - - PREDICTED: putative pentatricopeptide repeat-containing protein At1g53330 [Jatropha curcas]
2 Hb_041091_010 0.0850018814 - - PREDICTED: pentatricopeptide repeat-containing protein At1g05670, mitochondrial [Jatropha curcas]
3 Hb_000803_150 0.0881131471 - - PREDICTED: uncharacterized protein LOC105648311 isoform X2 [Jatropha curcas]
4 Hb_002863_040 0.0906252905 - - PREDICTED: uncharacterized protein LOC105630268 [Jatropha curcas]
5 Hb_000195_020 0.0908098355 - - PREDICTED: pentatricopeptide repeat-containing protein At4g19191, mitochondrial [Jatropha curcas]
6 Hb_003938_080 0.093384641 - - PREDICTED: uncharacterized protein LOC105644554 [Jatropha curcas]
7 Hb_000538_200 0.0959693941 - - PREDICTED: pentatricopeptide repeat-containing protein At2g22070-like [Jatropha curcas]
8 Hb_002783_260 0.096014366 - - hypothetical protein JCGZ_08219 [Jatropha curcas]
9 Hb_004096_020 0.0973825532 - - PREDICTED: KH domain-containing protein At4g18375-like, partial [Fragaria vesca subsp. vesca]
10 Hb_123777_030 0.099072728 transcription factor TF Family: SNF2 PREDICTED: DNA helicase INO80 isoform X2 [Jatropha curcas]
11 Hb_001871_040 0.1030380479 transcription factor TF Family: FAR1 PREDICTED: protein FAR1-RELATED SEQUENCE 1-like isoform X2 [Jatropha curcas]
12 Hb_001141_330 0.1039491191 - - PREDICTED: pentatricopeptide repeat-containing protein At4g14850 [Jatropha curcas]
13 Hb_000661_050 0.1042574408 - - PREDICTED: ankyrin repeat domain-containing protein 13C-like [Jatropha curcas]
14 Hb_008247_010 0.1042787079 - - PREDICTED: leucine--tRNA ligase, cytoplasmic [Jatropha curcas]
15 Hb_001245_070 0.1044512141 - - PREDICTED: uncharacterized protein LOC105633557 [Jatropha curcas]
16 Hb_033834_010 0.1053705616 - - PREDICTED: leucine--tRNA ligase, cytoplasmic [Jatropha curcas]
17 Hb_001538_010 0.106977255 - - -
18 Hb_003406_040 0.1083191608 - - PREDICTED: ATP-dependent RNA helicase DHX36 [Jatropha curcas]
19 Hb_034722_010 0.1084845313 - - PREDICTED: putative pentatricopeptide repeat-containing protein At3g13770, mitochondrial [Populus euphratica]
20 Hb_007586_030 0.111073574 - - PREDICTED: pentatricopeptide repeat-containing protein At2g15690-like isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_004048_090 Hb_004048_090 Hb_041091_010 Hb_041091_010 Hb_004048_090--Hb_041091_010 Hb_000803_150 Hb_000803_150 Hb_004048_090--Hb_000803_150 Hb_002863_040 Hb_002863_040 Hb_004048_090--Hb_002863_040 Hb_000195_020 Hb_000195_020 Hb_004048_090--Hb_000195_020 Hb_003938_080 Hb_003938_080 Hb_004048_090--Hb_003938_080 Hb_000538_200 Hb_000538_200 Hb_004048_090--Hb_000538_200 Hb_001584_110 Hb_001584_110 Hb_041091_010--Hb_001584_110 Hb_041091_010--Hb_000803_150 Hb_001871_040 Hb_001871_040 Hb_041091_010--Hb_001871_040 Hb_000077_050 Hb_000077_050 Hb_041091_010--Hb_000077_050 Hb_001504_160 Hb_001504_160 Hb_041091_010--Hb_001504_160 Hb_000076_080 Hb_000076_080 Hb_041091_010--Hb_000076_080 Hb_001214_130 Hb_001214_130 Hb_000803_150--Hb_001214_130 Hb_000162_090 Hb_000162_090 Hb_000803_150--Hb_000162_090 Hb_000749_150 Hb_000749_150 Hb_000803_150--Hb_000749_150 Hb_003642_060 Hb_003642_060 Hb_000803_150--Hb_003642_060 Hb_185467_020 Hb_185467_020 Hb_000803_150--Hb_185467_020 Hb_002863_040--Hb_000195_020 Hb_004096_030 Hb_004096_030 Hb_002863_040--Hb_004096_030 Hb_003406_040 Hb_003406_040 Hb_002863_040--Hb_003406_040 Hb_004195_280 Hb_004195_280 Hb_002863_040--Hb_004195_280 Hb_004096_020 Hb_004096_020 Hb_002863_040--Hb_004096_020 Hb_001797_050 Hb_001797_050 Hb_000195_020--Hb_001797_050 Hb_000195_020--Hb_004096_020 Hb_005532_050 Hb_005532_050 Hb_000195_020--Hb_005532_050 Hb_000195_020--Hb_003938_080 Hb_033834_010 Hb_033834_010 Hb_000195_020--Hb_033834_010 Hb_009411_010 Hb_009411_010 Hb_000195_020--Hb_009411_010 Hb_003938_080--Hb_009411_010 Hb_003216_080 Hb_003216_080 Hb_003938_080--Hb_003216_080 Hb_003544_100 Hb_003544_100 Hb_003938_080--Hb_003544_100 Hb_000101_240 Hb_000101_240 Hb_003938_080--Hb_000101_240 Hb_015884_030 Hb_015884_030 Hb_003938_080--Hb_015884_030 Hb_000502_050 Hb_000502_050 Hb_003938_080--Hb_000502_050 Hb_004600_040 Hb_004600_040 Hb_000538_200--Hb_004600_040 Hb_001157_060 Hb_001157_060 Hb_000538_200--Hb_001157_060 Hb_000815_210 Hb_000815_210 Hb_000538_200--Hb_000815_210 Hb_001736_040 Hb_001736_040 Hb_000538_200--Hb_001736_040 Hb_011673_030 Hb_011673_030 Hb_000538_200--Hb_011673_030 Hb_000421_260 Hb_000421_260 Hb_000538_200--Hb_000421_260
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.21221 0.633364 0.297793 0.185947 1.1722 1.87795
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.515955 0.730613 1.11471 0.335242 0.620427

CAGE analysis