Hb_004048_120

Information

Type -
Description -
Location Contig4048: 108009-126393
Sequence    

Annotation

kegg
ID rcu:RCOM_0106670
description hypothetical protein
nr
ID XP_012074439.1
description PREDICTED: nuclear pore complex protein NUP160 isoform X3 [Jatropha curcas]
swissprot
ID Q9C811
description Nuclear pore complex protein NUP160 OS=Arabidopsis thaliana GN=NUP160 PE=1 SV=2
trembl
ID A0A067LMI2
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_13466 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_40158: 108091-108674 , PASA_asmbl_40159: 110429-115263 , PASA_asmbl_40160: 115395-115633 , PASA_asmbl_40161: 115780-116034 , PASA_asmbl_40162: 116094-118323 , PASA_asmbl_40163: 118348-120172 , PASA_asmbl_40165: 120202-126041 , PASA_asmbl_40166: 120218-121809
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_004048_120 0.0 - - PREDICTED: nuclear pore complex protein NUP160 isoform X3 [Jatropha curcas]
2 Hb_003280_020 0.0309716753 - - PREDICTED: enhancer of mRNA-decapping protein 4 isoform X1 [Jatropha curcas]
3 Hb_004143_160 0.0495403691 - - SAB, putative [Ricinus communis]
4 Hb_002025_330 0.0502716333 - - peptide transporter, putative [Ricinus communis]
5 Hb_002749_060 0.0529148089 - - PREDICTED: protein transport protein Sec61 subunit alpha-like [Jatropha curcas]
6 Hb_000261_480 0.053196115 - - 26S proteasome regulatory subunit family protein [Populus trichocarpa]
7 Hb_000358_050 0.0538952952 - - PREDICTED: uncharacterized protein LOC105633378 [Jatropha curcas]
8 Hb_001341_180 0.0549572672 - - PREDICTED: transmembrane protein 209 [Jatropha curcas]
9 Hb_011819_020 0.0570442384 - - PREDICTED: uncharacterized protein LOC105643703 isoform X1 [Jatropha curcas]
10 Hb_004208_050 0.0571358921 desease resistance Gene Name: CDC48_N cell division cycle protein 48 [Hevea brasiliensis]
11 Hb_000890_070 0.059604281 - - PREDICTED: protein ALWAYS EARLY 3 isoform X2 [Jatropha curcas]
12 Hb_012286_040 0.0697914011 - - PREDICTED: pre-mRNA-splicing factor RSE1 [Jatropha curcas]
13 Hb_001440_030 0.0706983385 - - PREDICTED: exocyst complex component SEC8 [Jatropha curcas]
14 Hb_002639_080 0.072196342 - - PREDICTED: large proline-rich protein BAG6 isoform X1 [Jatropha curcas]
15 Hb_000001_170 0.0727996866 - - amino acid transporter, putative [Ricinus communis]
16 Hb_004677_050 0.0728544342 - - PREDICTED: importin beta-like SAD2 isoform X2 [Jatropha curcas]
17 Hb_001377_350 0.0737733726 - - PREDICTED: exportin-2 [Jatropha curcas]
18 Hb_002874_110 0.0737800841 - - PREDICTED: uncharacterized protein LOC105637451 [Jatropha curcas]
19 Hb_041327_010 0.0755273171 - - PREDICTED: la-related protein 1A isoform X1 [Jatropha curcas]
20 Hb_000317_100 0.0767830548 - - PREDICTED: uncharacterized protein LOC105646995 [Jatropha curcas]

Gene co-expression network

sample Hb_004048_120 Hb_004048_120 Hb_003280_020 Hb_003280_020 Hb_004048_120--Hb_003280_020 Hb_004143_160 Hb_004143_160 Hb_004048_120--Hb_004143_160 Hb_002025_330 Hb_002025_330 Hb_004048_120--Hb_002025_330 Hb_002749_060 Hb_002749_060 Hb_004048_120--Hb_002749_060 Hb_000261_480 Hb_000261_480 Hb_004048_120--Hb_000261_480 Hb_000358_050 Hb_000358_050 Hb_004048_120--Hb_000358_050 Hb_003280_020--Hb_002749_060 Hb_003280_020--Hb_002025_330 Hb_011819_020 Hb_011819_020 Hb_003280_020--Hb_011819_020 Hb_003280_020--Hb_000261_480 Hb_012330_010 Hb_012330_010 Hb_003280_020--Hb_012330_010 Hb_004143_160--Hb_000358_050 Hb_007994_010 Hb_007994_010 Hb_004143_160--Hb_007994_010 Hb_004143_160--Hb_002025_330 Hb_135572_010 Hb_135572_010 Hb_004143_160--Hb_135572_010 Hb_002639_080 Hb_002639_080 Hb_004143_160--Hb_002639_080 Hb_000922_030 Hb_000922_030 Hb_002025_330--Hb_000922_030 Hb_002025_330--Hb_000358_050 Hb_055062_040 Hb_055062_040 Hb_002025_330--Hb_055062_040 Hb_000890_070 Hb_000890_070 Hb_002749_060--Hb_000890_070 Hb_002749_060--Hb_011819_020 Hb_001377_350 Hb_001377_350 Hb_002749_060--Hb_001377_350 Hb_065500_020 Hb_065500_020 Hb_002749_060--Hb_065500_020 Hb_004208_050 Hb_004208_050 Hb_000261_480--Hb_004208_050 Hb_000261_480--Hb_011819_020 Hb_002890_130 Hb_002890_130 Hb_000261_480--Hb_002890_130 Hb_000261_480--Hb_001377_350 Hb_000358_050--Hb_004208_050 Hb_000358_050--Hb_000922_030 Hb_011485_060 Hb_011485_060 Hb_000358_050--Hb_011485_060 Hb_000358_050--Hb_135572_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
2.94611 5.80576 4.31041 6.52558 4.7089 5.53453
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
3.22375 2.74959 3.93179 9.68706 8.66566

CAGE analysis