Hb_004048_140

Information

Type -
Description -
Location Contig4048: 132688-134158
Sequence    

Annotation

kegg
ID -
description -
nr
ID -
description -
swissprot
ID -
description -
trembl
ID -
description -
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_004048_140 0.0 - - -
2 Hb_007017_060 0.1550706989 - - PREDICTED: 5-formyltetrahydrofolate cyclo-ligase, mitochondrial-like [Jatropha curcas]
3 Hb_017417_010 0.1758483476 - - -
4 Hb_009801_010 0.176255633 - - ATPase inhibitor, putative [Ricinus communis]
5 Hb_001473_190 0.1771414383 - - 50S ribosomal protein L20 [Hevea brasiliensis]
6 Hb_004324_020 0.1885101633 - - -
7 Hb_107847_010 0.1938084577 - - 3-isopropylmalate dehydratase, putative [Ricinus communis]
8 Hb_000012_180 0.1950039483 - - conserved hypothetical protein [Ricinus communis]
9 Hb_003813_200 0.1951627476 - - PREDICTED: probable receptor-like protein kinase At1g67000 [Jatropha curcas]
10 Hb_003581_110 0.1990143935 - - PREDICTED: uncharacterized protein LOC105649778 isoform X2 [Jatropha curcas]
11 Hb_008078_030 0.2025236221 - - -
12 Hb_000307_170 0.2034782129 - - PREDICTED: uncharacterized protein LOC105638528 [Jatropha curcas]
13 Hb_000264_060 0.2035031109 - - PREDICTED: RNA polymerase-associated protein RTF1 homolog [Jatropha curcas]
14 Hb_179511_010 0.2048138237 - - -
15 Hb_005714_040 0.2079959514 - - conserved hypothetical protein [Ricinus communis]
16 Hb_020730_010 0.2080929933 - - hypothetical protein CICLE_v10010243mg, partial [Citrus clementina]
17 Hb_036227_010 0.2087533922 - - -
18 Hb_074683_020 0.2091589312 - - PREDICTED: 60S ribosomal protein L27-3 [Jatropha curcas]
19 Hb_003849_080 0.2101737695 - - PREDICTED: sufE-like protein 2, chloroplastic isoform X2 [Jatropha curcas]
20 Hb_000684_300 0.2109728057 transcription factor TF Family: NF-YB hypothetical protein CICLE_v10012920mg [Citrus clementina]

Gene co-expression network

sample Hb_004048_140 Hb_004048_140 Hb_007017_060 Hb_007017_060 Hb_004048_140--Hb_007017_060 Hb_017417_010 Hb_017417_010 Hb_004048_140--Hb_017417_010 Hb_009801_010 Hb_009801_010 Hb_004048_140--Hb_009801_010 Hb_001473_190 Hb_001473_190 Hb_004048_140--Hb_001473_190 Hb_004324_020 Hb_004324_020 Hb_004048_140--Hb_004324_020 Hb_107847_010 Hb_107847_010 Hb_004048_140--Hb_107847_010 Hb_005714_040 Hb_005714_040 Hb_007017_060--Hb_005714_040 Hb_000058_040 Hb_000058_040 Hb_007017_060--Hb_000058_040 Hb_000183_070 Hb_000183_070 Hb_007017_060--Hb_000183_070 Hb_000264_060 Hb_000264_060 Hb_007017_060--Hb_000264_060 Hb_001663_110 Hb_001663_110 Hb_007017_060--Hb_001663_110 Hb_007017_060--Hb_009801_010 Hb_000668_010 Hb_000668_010 Hb_017417_010--Hb_000668_010 Hb_000922_150 Hb_000922_150 Hb_017417_010--Hb_000922_150 Hb_017417_010--Hb_000183_070 Hb_019936_010 Hb_019936_010 Hb_017417_010--Hb_019936_010 Hb_017417_010--Hb_005714_040 Hb_001956_120 Hb_001956_120 Hb_009801_010--Hb_001956_120 Hb_005015_010 Hb_005015_010 Hb_009801_010--Hb_005015_010 Hb_000392_280 Hb_000392_280 Hb_009801_010--Hb_000392_280 Hb_000307_170 Hb_000307_170 Hb_009801_010--Hb_000307_170 Hb_000976_270 Hb_000976_270 Hb_009801_010--Hb_000976_270 Hb_003581_110 Hb_003581_110 Hb_009801_010--Hb_003581_110 Hb_000093_130 Hb_000093_130 Hb_001473_190--Hb_000093_130 Hb_000116_570 Hb_000116_570 Hb_001473_190--Hb_000116_570 Hb_000684_300 Hb_000684_300 Hb_001473_190--Hb_000684_300 Hb_001703_130 Hb_001703_130 Hb_001473_190--Hb_001703_130 Hb_003813_200 Hb_003813_200 Hb_001473_190--Hb_003813_200 Hb_063409_020 Hb_063409_020 Hb_001473_190--Hb_063409_020 Hb_000012_180 Hb_000012_180 Hb_004324_020--Hb_000012_180 Hb_116195_010 Hb_116195_010 Hb_004324_020--Hb_116195_010 Hb_080083_010 Hb_080083_010 Hb_004324_020--Hb_080083_010 Hb_000525_040 Hb_000525_040 Hb_004324_020--Hb_000525_040 Hb_004324_020--Hb_017417_010 Hb_000996_180 Hb_000996_180 Hb_107847_010--Hb_000996_180 Hb_089889_020 Hb_089889_020 Hb_107847_010--Hb_089889_020 Hb_009838_130 Hb_009838_130 Hb_107847_010--Hb_009838_130 Hb_000504_170 Hb_000504_170 Hb_107847_010--Hb_000504_170 Hb_009693_030 Hb_009693_030 Hb_107847_010--Hb_009693_030 Hb_107847_010--Hb_000264_060
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
2.0752 0.41576 0.441749 0.0931798 2.15648 0.905552
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.598434 1.01904 0 0.0321306 0.151899

CAGE analysis