Hb_004052_030

Information

Type -
Description -
Location Contig4052: 51012-51902
Sequence    

Annotation

kegg
ID rcu:RCOM_1469500
description hypothetical protein
nr
ID XP_012080393.1
description PREDICTED: uncharacterized protein LOC105640637 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID B9RLM5
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1469500 PE=4 SV=1
Gene Ontology
ID GO:0009535
description wiskott-aldrich syndrome protein family member 2

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_40178: 51038-51912 , PASA_asmbl_40179: 51229-51462
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_004052_030 0.0 - - PREDICTED: uncharacterized protein LOC105640637 [Jatropha curcas]
2 Hb_000984_160 0.0704709089 - - PREDICTED: amino acid permease 6-like isoform X1 [Jatropha curcas]
3 Hb_044478_010 0.0761426298 - - plastoquinol-plastocyanin reductase, putative [Ricinus communis]
4 Hb_003358_030 0.0829168498 - - ankyrin-kinase, putative [Ricinus communis]
5 Hb_005111_040 0.0861379645 - - glucose-6-phosphate dehydrogenase [Hevea brasiliensis]
6 Hb_005569_010 0.0899644144 - - Heme-binding protein, putative [Ricinus communis]
7 Hb_000482_180 0.0909251148 - - PREDICTED: glycine dehydrogenase (decarboxylating), mitochondrial [Jatropha curcas]
8 Hb_005694_120 0.0920056834 - - PREDICTED: calcium-transporting ATPase, endoplasmic reticulum-type [Jatropha curcas]
9 Hb_000608_190 0.0923961463 rubber biosynthesis Gene Name: Isopentenyl-diphosphate delta isomerase PREDICTED: isopentenyl-diphosphate Delta-isomerase I [Jatropha curcas]
10 Hb_000847_030 0.0929094936 - - PREDICTED: asparagine--tRNA ligase, cytoplasmic 2 [Jatropha curcas]
11 Hb_002042_210 0.0947034289 - - PREDICTED: UPF0603 protein At1g54780, chloroplastic [Jatropha curcas]
12 Hb_003195_080 0.0975060002 - - PREDICTED: cytochrome P450 87A3-like [Jatropha curcas]
13 Hb_006291_050 0.0992848465 - - PREDICTED: polyribonucleotide nucleotidyltransferase 2, mitochondrial isoform X1 [Jatropha curcas]
14 Hb_001946_120 0.1001039973 - - PREDICTED: SPX domain-containing protein 1-like [Jatropha curcas]
15 Hb_022693_010 0.1006870722 - - pectin acetylesterase, putative [Ricinus communis]
16 Hb_153258_040 0.1013941376 - - PREDICTED: type I inositol 1,4,5-trisphosphate 5-phosphatase CVP2-like [Jatropha curcas]
17 Hb_011214_130 0.1027992024 transcription factor TF Family: NAC PREDICTED: NAC domain-containing protein 86 [Jatropha curcas]
18 Hb_000424_140 0.1029474347 - - Protein kinase APK1A, chloroplast precursor, putative [Ricinus communis]
19 Hb_048755_030 0.1075043568 - - Periplasmic beta-glucosidase precursor, putative [Ricinus communis]
20 Hb_000477_090 0.1101543932 - - PREDICTED: uncharacterized protein LOC105639302 [Jatropha curcas]

Gene co-expression network

sample Hb_004052_030 Hb_004052_030 Hb_000984_160 Hb_000984_160 Hb_004052_030--Hb_000984_160 Hb_044478_010 Hb_044478_010 Hb_004052_030--Hb_044478_010 Hb_003358_030 Hb_003358_030 Hb_004052_030--Hb_003358_030 Hb_005111_040 Hb_005111_040 Hb_004052_030--Hb_005111_040 Hb_005569_010 Hb_005569_010 Hb_004052_030--Hb_005569_010 Hb_000482_180 Hb_000482_180 Hb_004052_030--Hb_000482_180 Hb_000984_160--Hb_005569_010 Hb_131876_010 Hb_131876_010 Hb_000984_160--Hb_131876_010 Hb_069696_020 Hb_069696_020 Hb_000984_160--Hb_069696_020 Hb_001946_120 Hb_001946_120 Hb_000984_160--Hb_001946_120 Hb_000847_030 Hb_000847_030 Hb_000984_160--Hb_000847_030 Hb_153258_040 Hb_153258_040 Hb_044478_010--Hb_153258_040 Hb_002042_210 Hb_002042_210 Hb_044478_010--Hb_002042_210 Hb_131466_010 Hb_131466_010 Hb_044478_010--Hb_131466_010 Hb_044478_010--Hb_001946_120 Hb_044478_010--Hb_005111_040 Hb_001999_230 Hb_001999_230 Hb_044478_010--Hb_001999_230 Hb_000608_190 Hb_000608_190 Hb_003358_030--Hb_000608_190 Hb_029386_010 Hb_029386_010 Hb_003358_030--Hb_029386_010 Hb_001488_160 Hb_001488_160 Hb_003358_030--Hb_001488_160 Hb_000477_090 Hb_000477_090 Hb_003358_030--Hb_000477_090 Hb_007620_020 Hb_007620_020 Hb_003358_030--Hb_007620_020 Hb_006291_050 Hb_006291_050 Hb_005111_040--Hb_006291_050 Hb_005111_040--Hb_000482_180 Hb_001007_070 Hb_001007_070 Hb_005111_040--Hb_001007_070 Hb_009193_070 Hb_009193_070 Hb_005111_040--Hb_009193_070 Hb_005111_040--Hb_131466_010 Hb_004835_020 Hb_004835_020 Hb_005569_010--Hb_004835_020 Hb_000424_140 Hb_000424_140 Hb_005569_010--Hb_000424_140 Hb_003195_080 Hb_003195_080 Hb_005569_010--Hb_003195_080 Hb_000329_440 Hb_000329_440 Hb_005569_010--Hb_000329_440 Hb_000958_090 Hb_000958_090 Hb_005569_010--Hb_000958_090 Hb_048755_030 Hb_048755_030 Hb_000482_180--Hb_048755_030 Hb_002701_250 Hb_002701_250 Hb_000482_180--Hb_002701_250 Hb_007904_110 Hb_007904_110 Hb_000482_180--Hb_007904_110 Hb_000482_180--Hb_006291_050 Hb_005305_070 Hb_005305_070 Hb_000482_180--Hb_005305_070
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.31696 11.1262 72.5061 81.0241 0.339588 0.557501
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.861603 0.57326 0.28316 16.8884 213.176

CAGE analysis