Hb_004052_090

Information

Type transcription factor
Description TF Family: C3H
Location Contig4052: 96487-104408
Sequence    

Annotation

kegg
ID rcu:RCOM_1469330
description hypothetical protein
nr
ID XP_012080401.1
description PREDICTED: serine/arginine repetitive matrix protein 2-like [Jatropha curcas]
swissprot
ID Q6YYC0
description Zinc finger CCCH domain-containing protein 55 OS=Oryza sativa subsp. japonica GN=Os08g0135800 PE=2 SV=1
trembl
ID A0A067KGH7
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_11741 PE=4 SV=1
Gene Ontology
ID GO:0005488
description serine arginine repetitive matrix protein 2-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_40191: 96524-99199 , PASA_asmbl_40192: 99255-102957 , PASA_asmbl_40193: 103131-104329
cDNA
(Sanger)
(ID:Location)		 029_N07.ab1: 96698-98294 , 031_L24.ab1: 96698-98294

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_004052_090 0.0 transcription factor TF Family: C3H PREDICTED: serine/arginine repetitive matrix protein 2-like [Jatropha curcas]
2 Hb_000258_270 0.0470652213 - - PREDICTED: cullin-3A [Jatropha curcas]
3 Hb_000206_240 0.0655197137 - - conserved hypothetical protein [Ricinus communis]
4 Hb_007483_100 0.0771260161 - - hypothetical protein POPTR_0001s34330g [Populus trichocarpa]
5 Hb_000836_040 0.0857622672 - - PREDICTED: AT-rich interactive domain-containing protein 1 isoform X1 [Jatropha curcas]
6 Hb_003371_090 0.0862588574 - - PREDICTED: uncharacterized protein LOC105650336 [Jatropha curcas]
7 Hb_002218_010 0.090685235 transcription factor TF Family: Orphans ethylene receptor, putative [Ricinus communis]
8 Hb_006915_030 0.0909849635 transcription factor TF Family: FAR1 PREDICTED: protein FAR1-RELATED SEQUENCE 8 [Jatropha curcas]
9 Hb_003142_020 0.093048458 - - PREDICTED: uncharacterized protein LOC105648334 [Jatropha curcas]
10 Hb_000567_120 0.0936470061 - - PREDICTED: transcription factor IIIB 50 kDa subunit-like [Jatropha curcas]
11 Hb_000270_670 0.0937581791 transcription factor TF Family: IWS1 PREDICTED: uncharacterized protein LOC105640420 [Jatropha curcas]
12 Hb_000723_130 0.0939752687 desease resistance Gene Name: CDC48_N cell division cycle protein 48 [Hevea brasiliensis]
13 Hb_007532_030 0.0944598543 - - PREDICTED: F-box/kelch-repeat protein At1g30090 [Jatropha curcas]
14 Hb_004846_070 0.0954411369 - - PREDICTED: pentatricopeptide repeat-containing protein At3g14730 [Populus euphratica]
15 Hb_000213_100 0.0954610067 - - PREDICTED: pentatricopeptide repeat-containing protein At1g79540-like [Jatropha curcas]
16 Hb_030565_030 0.095631669 - - PREDICTED: splicing regulatory glutamine/lysine-rich protein 1-like [Jatropha curcas]
17 Hb_001959_190 0.0968844955 transcription factor TF Family: SET PREDICTED: histone-lysine N-methyltransferase family member SUVH9-like [Jatropha curcas]
18 Hb_011242_040 0.0970829277 transcription factor TF Family: ARID PREDICTED: AT-rich interactive domain-containing protein 1 isoform X1 [Jatropha curcas]
19 Hb_000041_100 0.0978596393 - - PREDICTED: zinc finger CCCH domain-containing protein 41 [Jatropha curcas]
20 Hb_002942_100 0.0981193257 - - PREDICTED: pentatricopeptide repeat-containing protein At5g61990, mitochondrial [Jatropha curcas]

Gene co-expression network

sample Hb_004052_090 Hb_004052_090 Hb_000258_270 Hb_000258_270 Hb_004052_090--Hb_000258_270 Hb_000206_240 Hb_000206_240 Hb_004052_090--Hb_000206_240 Hb_007483_100 Hb_007483_100 Hb_004052_090--Hb_007483_100 Hb_000836_040 Hb_000836_040 Hb_004052_090--Hb_000836_040 Hb_003371_090 Hb_003371_090 Hb_004052_090--Hb_003371_090 Hb_002218_010 Hb_002218_010 Hb_004052_090--Hb_002218_010 Hb_000258_270--Hb_000836_040 Hb_000567_120 Hb_000567_120 Hb_000258_270--Hb_000567_120 Hb_001140_220 Hb_001140_220 Hb_000258_270--Hb_001140_220 Hb_000003_250 Hb_000003_250 Hb_000258_270--Hb_000003_250 Hb_016901_010 Hb_016901_010 Hb_000258_270--Hb_016901_010 Hb_004846_070 Hb_004846_070 Hb_000206_240--Hb_004846_070 Hb_000107_420 Hb_000107_420 Hb_000206_240--Hb_000107_420 Hb_000213_100 Hb_000213_100 Hb_000206_240--Hb_000213_100 Hb_000206_240--Hb_000258_270 Hb_000206_240--Hb_007483_100 Hb_002678_020 Hb_002678_020 Hb_007483_100--Hb_002678_020 Hb_004374_070 Hb_004374_070 Hb_007483_100--Hb_004374_070 Hb_009178_030 Hb_009178_030 Hb_007483_100--Hb_009178_030 Hb_007483_100--Hb_000258_270 Hb_030565_030 Hb_030565_030 Hb_000836_040--Hb_030565_030 Hb_004724_080 Hb_004724_080 Hb_000836_040--Hb_004724_080 Hb_000836_040--Hb_000003_250 Hb_000047_030 Hb_000047_030 Hb_000836_040--Hb_000047_030 Hb_000041_100 Hb_000041_100 Hb_003371_090--Hb_000041_100 Hb_003371_090--Hb_000213_100 Hb_007508_090 Hb_007508_090 Hb_003371_090--Hb_007508_090 Hb_002450_020 Hb_002450_020 Hb_003371_090--Hb_002450_020 Hb_000710_060 Hb_000710_060 Hb_003371_090--Hb_000710_060 Hb_000297_010 Hb_000297_010 Hb_003371_090--Hb_000297_010 Hb_007532_030 Hb_007532_030 Hb_002218_010--Hb_007532_030 Hb_002218_010--Hb_000213_100 Hb_005348_140 Hb_005348_140 Hb_002218_010--Hb_005348_140 Hb_002218_010--Hb_009178_030 Hb_000343_130 Hb_000343_130 Hb_002218_010--Hb_000343_130
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
15.6328 14.6354 4.30066 11.348 9.82025 15.8653
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
14.7548 14.1026 31.8273 10.6041 14.3943

CAGE analysis