Hb_004052_100

Information

Type -
Description -
Location Contig4052: 106502-113109
Sequence    

Annotation

kegg
ID rcu:RCOM_1469320
description SP1L, putative
nr
ID XP_012080403.1
description PREDICTED: protein SPIRAL1-like 3 [Jatropha curcas]
swissprot
ID B3H4F1
description Protein SPIRAL1-like 1 OS=Arabidopsis thaliana GN=SP1L1 PE=2 SV=1
trembl
ID A0A067K561
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_11742 PE=4 SV=1
Gene Ontology
ID GO:0005886
description protein spiral1-like 1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_40194: 106484-113165 , PASA_asmbl_40195: 106382-113153
cDNA
(Sanger)
(ID:Location)		 005_C10.ab1: 106390-113013 , 005_F05.ab1: 106382-113153 , 013_I06.ab1: 106382-113135 , 014_F03.ab1: 106390-113013 , 028_H15.ab1: 106390-113135 , 029_I08.ab1: 106385-113026 , 041_C02.ab1: 106390-113022 , 049_J18.ab1: 106390-113135 , 053_H17.ab1: 106382-113135

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_004052_100 0.0 - - PREDICTED: protein SPIRAL1-like 3 [Jatropha curcas]
2 Hb_001408_170 0.1043977904 - - PREDICTED: phosphoglycolate phosphatase 2 [Jatropha curcas]
3 Hb_011174_040 0.124833359 - - conserved hypothetical protein [Ricinus communis]
4 Hb_001329_070 0.1400522067 - - Glycogen synthase kinase-3 beta, putative [Ricinus communis]
5 Hb_003299_020 0.1420991884 - - PREDICTED: uncharacterized protein LOC105649783 [Jatropha curcas]
6 Hb_003398_040 0.1498280952 - - PREDICTED: actin-related protein 5 isoform X1 [Jatropha curcas]
7 Hb_001377_530 0.1512494309 - - NC domain-containing family protein [Populus trichocarpa]
8 Hb_032568_010 0.1524381881 - - PREDICTED: protein phosphatase 2C 56-like [Jatropha curcas]
9 Hb_000206_230 0.1529211258 - - conserved hypothetical protein [Ricinus communis]
10 Hb_029977_020 0.152947533 - - PREDICTED: uncharacterized protein LOC105640153 isoform X1 [Jatropha curcas]
11 Hb_000753_110 0.1529674871 transcription factor TF Family: bHLH PREDICTED: transcription factor BIM1 isoform X6 [Jatropha curcas]
12 Hb_001268_160 0.1550630557 - - Glycerophosphodiester phosphodiesterase [Medicago truncatula]
13 Hb_006153_150 0.1572004299 - - PREDICTED: uncharacterized protein LOC105645999 [Jatropha curcas]
14 Hb_002016_140 0.1577475063 - - PREDICTED: probable E3 ubiquitin-protein ligase BAH1-like 1 [Jatropha curcas]
15 Hb_002641_120 0.1584881841 - - PREDICTED: calmodulin [Jatropha curcas]
16 Hb_014508_010 0.1615309749 - - PREDICTED: uncharacterized protein LOC105629998 [Jatropha curcas]
17 Hb_006951_030 0.162968364 - - PREDICTED: protein MCM10 homolog [Jatropha curcas]
18 Hb_000941_060 0.1642054522 transcription factor TF Family: HB hypothetical protein POPTR_0016s05890g [Populus trichocarpa]
19 Hb_010381_040 0.1703962638 - - beta-galactosidase, putative [Ricinus communis]
20 Hb_003050_360 0.172862573 - - PREDICTED: tobamovirus multiplication protein 1 isoform X2 [Jatropha curcas]

Gene co-expression network

sample Hb_004052_100 Hb_004052_100 Hb_001408_170 Hb_001408_170 Hb_004052_100--Hb_001408_170 Hb_011174_040 Hb_011174_040 Hb_004052_100--Hb_011174_040 Hb_001329_070 Hb_001329_070 Hb_004052_100--Hb_001329_070 Hb_003299_020 Hb_003299_020 Hb_004052_100--Hb_003299_020 Hb_003398_040 Hb_003398_040 Hb_004052_100--Hb_003398_040 Hb_001377_530 Hb_001377_530 Hb_004052_100--Hb_001377_530 Hb_001268_160 Hb_001268_160 Hb_001408_170--Hb_001268_160 Hb_001401_040 Hb_001401_040 Hb_001408_170--Hb_001401_040 Hb_001408_170--Hb_001377_530 Hb_010381_040 Hb_010381_040 Hb_001408_170--Hb_010381_040 Hb_001408_170--Hb_011174_040 Hb_003050_360 Hb_003050_360 Hb_011174_040--Hb_003050_360 Hb_000076_030 Hb_000076_030 Hb_011174_040--Hb_000076_030 Hb_007101_260 Hb_007101_260 Hb_011174_040--Hb_007101_260 Hb_048476_140 Hb_048476_140 Hb_011174_040--Hb_048476_140 Hb_010672_050 Hb_010672_050 Hb_011174_040--Hb_010672_050 Hb_011174_040--Hb_010381_040 Hb_000206_230 Hb_000206_230 Hb_001329_070--Hb_000206_230 Hb_002016_140 Hb_002016_140 Hb_001329_070--Hb_002016_140 Hb_002027_440 Hb_002027_440 Hb_001329_070--Hb_002027_440 Hb_011242_050 Hb_011242_050 Hb_001329_070--Hb_011242_050 Hb_013405_070 Hb_013405_070 Hb_001329_070--Hb_013405_070 Hb_003602_060 Hb_003602_060 Hb_001329_070--Hb_003602_060 Hb_005545_020 Hb_005545_020 Hb_003299_020--Hb_005545_020 Hb_000753_110 Hb_000753_110 Hb_003299_020--Hb_000753_110 Hb_003299_020--Hb_010672_050 Hb_003299_020--Hb_001377_530 Hb_000009_420 Hb_000009_420 Hb_003299_020--Hb_000009_420 Hb_003299_020--Hb_003398_040 Hb_000310_060 Hb_000310_060 Hb_003398_040--Hb_000310_060 Hb_003398_040--Hb_000009_420 Hb_001587_040 Hb_001587_040 Hb_003398_040--Hb_001587_040 Hb_005527_060 Hb_005527_060 Hb_003398_040--Hb_005527_060 Hb_010868_040 Hb_010868_040 Hb_003398_040--Hb_010868_040 Hb_003398_040--Hb_000753_110 Hb_001377_530--Hb_003050_360 Hb_002641_120 Hb_002641_120 Hb_001377_530--Hb_002641_120 Hb_001377_530--Hb_003398_040 Hb_001123_310 Hb_001123_310 Hb_001377_530--Hb_001123_310
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.40597 23.3936 161.481 112.573 0.416524 0.325928
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
8.66453 36.8683 21.1189 42.438 72.4758

CAGE analysis