Hb_004052_110

Information

Type -
Description -
Location Contig4052: 113926-123639
Sequence    

Annotation

kegg
ID rcu:RCOM_1469310
description kelch repeat protein, putative
nr
ID XP_012080404.1
description PREDICTED: host cell factor 2 isoform X1 [Jatropha curcas]
swissprot
ID P87061
description Tip elongation aberrant protein 1 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=tea1 PE=1 SV=1
trembl
ID A0A067K5H1
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_11743 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_40197: 114185-123388
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_004052_110 0.0 - - PREDICTED: host cell factor 2 isoform X1 [Jatropha curcas]
2 Hb_002259_220 0.0665305523 transcription factor TF Family: C3H PREDICTED: zinc finger CCCH domain-containing protein 66 [Jatropha curcas]
3 Hb_001059_060 0.0727782259 - - PREDICTED: bifunctional riboflavin kinase/FMN phosphatase [Jatropha curcas]
4 Hb_001998_210 0.0787501524 - - unnamed protein product [Coffea canephora]
5 Hb_001865_100 0.0795663562 - - PREDICTED: ACT domain-containing protein ACR9 [Jatropha curcas]
6 Hb_000979_140 0.0805391629 - - kinase family protein [Populus trichocarpa]
7 Hb_011188_010 0.0885568857 - - PREDICTED: uncharacterized protein LOC105642145 isoform X1 [Jatropha curcas]
8 Hb_001439_070 0.0901652597 transcription factor TF Family: WRKY WRKY transcription factor, putative [Ricinus communis]
9 Hb_000487_370 0.0924850253 - - -
10 Hb_000665_200 0.0936125074 - - calcineurin-like phosphoesterase [Manihot esculenta]
11 Hb_009078_020 0.0950408298 - - PREDICTED: CDPK-related kinase 7-like [Populus euphratica]
12 Hb_001999_320 0.1003904384 transcription factor TF Family: MYB-related PREDICTED: transcription factor DIVARICATA [Jatropha curcas]
13 Hb_001514_240 0.1008410465 - - PREDICTED: aspartic proteinase CDR1 [Jatropha curcas]
14 Hb_013968_010 0.1022964523 - - PREDICTED: U4/U6 small nuclear ribonucleoprotein Prp3 [Jatropha curcas]
15 Hb_000414_080 0.1024639124 - - PREDICTED: triosephosphate isomerase, chloroplastic [Jatropha curcas]
16 Hb_003687_130 0.1036052371 - - PREDICTED: probable methyltransferase PMT3 [Jatropha curcas]
17 Hb_002026_030 0.1038391757 desease resistance Gene Name: NB-ARC PREDICTED: mitogen-activated protein kinase kinase kinase YODA [Jatropha curcas]
18 Hb_000510_190 0.1053548569 - - glutathione reductase [Hevea brasiliensis]
19 Hb_000594_060 0.1077371957 - - PREDICTED: uncharacterized protein LOC105641988 [Jatropha curcas]
20 Hb_001221_300 0.1082853947 - - PREDICTED: acetolactate synthase 3, chloroplastic [Jatropha curcas]

Gene co-expression network

sample Hb_004052_110 Hb_004052_110 Hb_002259_220 Hb_002259_220 Hb_004052_110--Hb_002259_220 Hb_001059_060 Hb_001059_060 Hb_004052_110--Hb_001059_060 Hb_001998_210 Hb_001998_210 Hb_004052_110--Hb_001998_210 Hb_001865_100 Hb_001865_100 Hb_004052_110--Hb_001865_100 Hb_000979_140 Hb_000979_140 Hb_004052_110--Hb_000979_140 Hb_011188_010 Hb_011188_010 Hb_004052_110--Hb_011188_010 Hb_001514_240 Hb_001514_240 Hb_002259_220--Hb_001514_240 Hb_002259_220--Hb_011188_010 Hb_009078_020 Hb_009078_020 Hb_002259_220--Hb_009078_020 Hb_002259_220--Hb_001059_060 Hb_000477_070 Hb_000477_070 Hb_002259_220--Hb_000477_070 Hb_001059_060--Hb_009078_020 Hb_000853_330 Hb_000853_330 Hb_001059_060--Hb_000853_330 Hb_001059_060--Hb_011188_010 Hb_001059_060--Hb_001998_210 Hb_001439_070 Hb_001439_070 Hb_001059_060--Hb_001439_070 Hb_001414_010 Hb_001414_010 Hb_001998_210--Hb_001414_010 Hb_001998_210--Hb_001439_070 Hb_001998_210--Hb_009078_020 Hb_000300_030 Hb_000300_030 Hb_001998_210--Hb_000300_030 Hb_004943_040 Hb_004943_040 Hb_001865_100--Hb_004943_040 Hb_003687_130 Hb_003687_130 Hb_001865_100--Hb_003687_130 Hb_000665_200 Hb_000665_200 Hb_001865_100--Hb_000665_200 Hb_000510_190 Hb_000510_190 Hb_001865_100--Hb_000510_190 Hb_001865_100--Hb_002259_220 Hb_001729_020 Hb_001729_020 Hb_000979_140--Hb_001729_020 Hb_000452_030 Hb_000452_030 Hb_000979_140--Hb_000452_030 Hb_000015_090 Hb_000015_090 Hb_000979_140--Hb_000015_090 Hb_000197_180 Hb_000197_180 Hb_000979_140--Hb_000197_180 Hb_007416_260 Hb_007416_260 Hb_000979_140--Hb_007416_260 Hb_011188_010--Hb_009078_020 Hb_000300_560 Hb_000300_560 Hb_011188_010--Hb_000300_560 Hb_011188_010--Hb_000477_070 Hb_000594_060 Hb_000594_060 Hb_011188_010--Hb_000594_060 Hb_004577_010 Hb_004577_010 Hb_011188_010--Hb_004577_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
3.2305 15.2374 18.7845 14.8397 2.49523 3.38364
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
3.45565 2.96396 2.72268 7.24987 20.037

CAGE analysis