Hb_004055_010

Information

Type -
Description -
Location Contig4055: 5175-8667
Sequence    

Annotation

kegg
ID rcu:RCOM_0654950
description dead box ATP-dependent RNA helicase, putative
nr
ID XP_002521376.1
description dead box ATP-dependent RNA helicase, putative [Ricinus communis]
swissprot
ID Q40467
description Eukaryotic initiation factor 4A-14 OS=Nicotiana tabacum PE=2 SV=1
trembl
ID B9S5V7
description Dead box ATP-dependent RNA helicase, putative OS=Ricinus communis GN=RCOM_0654950 PE=3 SV=1
Gene Ontology
ID GO:0003743
description eukaryotic initiation factor 4a-8

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_40202: 5173-8804 , PASA_asmbl_40203: 5282-8794
cDNA
(Sanger)
(ID:Location)		 006_L05.ab1: 5176-7978 , 007_G13.ab1: 5176-7976 , 010_D07.ab1: 5176-7942 , 017_P09.ab1: 5176-7788 , 021_N10.ab1: 5176-7944 , 046_C23.ab1: 5181-7921 , 047_I12.ab1: 5176-7941

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_004055_010 0.0 - - dead box ATP-dependent RNA helicase, putative [Ricinus communis]
2 Hb_008959_030 0.0592325025 - - PREDICTED: universal stress protein A-like protein [Jatropha curcas]
3 Hb_004221_010 0.0659806447 transcription factor TF Family: NAC PREDICTED: NAC domain-containing protein 19-like [Jatropha curcas]
4 Hb_000483_350 0.0795667583 - - PREDICTED: uncharacterized protein LOC105632381 [Jatropha curcas]
5 Hb_004109_200 0.0802659741 - - PREDICTED: protein OSB2, chloroplastic-like [Jatropha curcas]
6 Hb_001655_070 0.0839511763 - - PREDICTED: chromatin structure-remodeling complex subunit RSC1 [Jatropha curcas]
7 Hb_002762_060 0.084954861 - - PREDICTED: diphthine methyltransferase homolog [Jatropha curcas]
8 Hb_000272_100 0.0940574326 - - PREDICTED: uncharacterized protein LOC103949110 [Pyrus x bretschneideri]
9 Hb_004012_010 0.0946237454 - - PREDICTED: 40S ribosomal protein S15a-1-like [Gossypium raimondii]
10 Hb_021254_030 0.0946256233 - - PREDICTED: mitochondrial substrate carrier family protein P [Jatropha curcas]
11 Hb_003052_100 0.096215706 - - ubiquitin-protein ligase, putative [Ricinus communis]
12 Hb_000798_060 0.0967274564 transcription factor TF Family: PHD -
13 Hb_159558_030 0.0968816955 - - ubiquitin-conjugating enzyme E2 variant 1D [Jatropha curcas]
14 Hb_004920_040 0.0972355018 - - PREDICTED: probable dimethyladenosine transferase [Jatropha curcas]
15 Hb_000085_270 0.0977530418 - - PREDICTED: pirin-like protein [Malus domestica]
16 Hb_001195_690 0.0983000105 - - PREDICTED: E3 ubiquitin-protein ligase RNF185 [Jatropha curcas]
17 Hb_158092_070 0.098620624 - - PREDICTED: cytochrome b-c1 complex subunit Rieske-4, mitochondrial-like [Jatropha curcas]
18 Hb_030312_040 0.0997641924 - - hypothetical protein JCGZ_04876 [Jatropha curcas]
19 Hb_024835_030 0.100995913 - - ubiquitin-conjugating enzyme E2, putative [Ricinus communis]
20 Hb_006452_030 0.1016701926 transcription factor TF Family: WRKY WRKY transcription factor, putative [Ricinus communis]

Gene co-expression network

sample Hb_004055_010 Hb_004055_010 Hb_008959_030 Hb_008959_030 Hb_004055_010--Hb_008959_030 Hb_004221_010 Hb_004221_010 Hb_004055_010--Hb_004221_010 Hb_000483_350 Hb_000483_350 Hb_004055_010--Hb_000483_350 Hb_004109_200 Hb_004109_200 Hb_004055_010--Hb_004109_200 Hb_001655_070 Hb_001655_070 Hb_004055_010--Hb_001655_070 Hb_002762_060 Hb_002762_060 Hb_004055_010--Hb_002762_060 Hb_008959_030--Hb_001655_070 Hb_008959_030--Hb_000483_350 Hb_008959_030--Hb_004109_200 Hb_005928_110 Hb_005928_110 Hb_008959_030--Hb_005928_110 Hb_008959_030--Hb_004221_010 Hb_158092_070 Hb_158092_070 Hb_004221_010--Hb_158092_070 Hb_004221_010--Hb_002762_060 Hb_001248_050 Hb_001248_050 Hb_004221_010--Hb_001248_050 Hb_000032_570 Hb_000032_570 Hb_004221_010--Hb_000032_570 Hb_000877_060 Hb_000877_060 Hb_004221_010--Hb_000877_060 Hb_000483_350--Hb_004109_200 Hb_000554_020 Hb_000554_020 Hb_000483_350--Hb_000554_020 Hb_000483_350--Hb_004221_010 Hb_009382_020 Hb_009382_020 Hb_000483_350--Hb_009382_020 Hb_000085_270 Hb_000085_270 Hb_000483_350--Hb_000085_270 Hb_010381_070 Hb_010381_070 Hb_004109_200--Hb_010381_070 Hb_000139_410 Hb_000139_410 Hb_004109_200--Hb_000139_410 Hb_021254_030 Hb_021254_030 Hb_004109_200--Hb_021254_030 Hb_002375_020 Hb_002375_020 Hb_004109_200--Hb_002375_020 Hb_005306_110 Hb_005306_110 Hb_004109_200--Hb_005306_110 Hb_000059_210 Hb_000059_210 Hb_001655_070--Hb_000059_210 Hb_002400_070 Hb_002400_070 Hb_001655_070--Hb_002400_070 Hb_001655_070--Hb_004221_010 Hb_015941_030 Hb_015941_030 Hb_001655_070--Hb_015941_030 Hb_157854_010 Hb_157854_010 Hb_002762_060--Hb_157854_010 Hb_024835_030 Hb_024835_030 Hb_002762_060--Hb_024835_030 Hb_004920_040 Hb_004920_040 Hb_002762_060--Hb_004920_040 Hb_000720_120 Hb_000720_120 Hb_002762_060--Hb_000720_120 Hb_002762_060--Hb_158092_070
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
2630.93 1348.33 214.27 755.658 1686.92 2246.18
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
2751.41 1836.05 1565 719.959 189.306

CAGE analysis