Hb_004055_040

Information

Type -
Description -
Location Contig4055: 28639-35891
Sequence    

Annotation

kegg
ID rcu:RCOM_0654980
description Phospholipid-transporting ATPase, putative (EC:3.6.3.1)
nr
ID XP_002521379.1
description Phospholipid-transporting ATPase, putative [Ricinus communis]
swissprot
ID Q9SLK6
description Phospholipid-transporting ATPase 6 OS=Arabidopsis thaliana GN=ALA6 PE=1 SV=2
trembl
ID B9S5W0
description Phospholipid-transporting ATPase OS=Ricinus communis GN=RCOM_0654980 PE=3 SV=1
Gene Ontology
ID GO:0016021
description phospholipid-transporting atpase 4 isoform x1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_40211: 28663-35942
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_004055_040 0.0 - - Phospholipid-transporting ATPase, putative [Ricinus communis]
2 Hb_002928_060 0.0490106271 - - PREDICTED: pre-rRNA-processing protein TSR1 homolog [Jatropha curcas]
3 Hb_005730_030 0.055179014 - - eukaryotic translation initiation factor 3 subunit, putative [Ricinus communis]
4 Hb_001366_040 0.0562225184 transcription factor TF Family: SNF2 PREDICTED: endoribonuclease Dicer homolog 1 [Jatropha curcas]
5 Hb_001871_040 0.0614716695 transcription factor TF Family: FAR1 PREDICTED: protein FAR1-RELATED SEQUENCE 1-like isoform X2 [Jatropha curcas]
6 Hb_000244_250 0.0635947158 transcription factor TF Family: C3H PREDICTED: zinc finger CCCH domain-containing protein 38 isoform X1 [Jatropha curcas]
7 Hb_000915_050 0.0641494997 - - conserved hypothetical protein [Ricinus communis]
8 Hb_123777_030 0.0669689803 transcription factor TF Family: SNF2 PREDICTED: DNA helicase INO80 isoform X2 [Jatropha curcas]
9 Hb_022408_010 0.0696632373 - - PREDICTED: protein SUPPRESSOR OF GENE SILENCING 3 [Jatropha curcas]
10 Hb_000627_080 0.0698116485 transcription factor TF Family: C3H PREDICTED: zinc finger CCCH domain-containing protein 48-like [Jatropha curcas]
11 Hb_003362_040 0.0722816067 - - PREDICTED: probable methionine--tRNA ligase [Jatropha curcas]
12 Hb_000390_070 0.0765633013 - - PREDICTED: uncharacterized protein LOC105632478 isoform X1 [Jatropha curcas]
13 Hb_000005_380 0.0767001712 - - PREDICTED: uncharacterized protein LOC105634023 isoform X1 [Jatropha curcas]
14 Hb_004452_100 0.0776169222 - - PREDICTED: uncharacterized protein LOC105639563 [Jatropha curcas]
15 Hb_004096_020 0.0781894932 - - PREDICTED: KH domain-containing protein At4g18375-like, partial [Fragaria vesca subsp. vesca]
16 Hb_000184_130 0.0788793201 - - PREDICTED: uncharacterized protein LOC105641544 isoform X1 [Jatropha curcas]
17 Hb_001504_160 0.079847551 - - PREDICTED: nuclear pore complex protein NUP96 [Jatropha curcas]
18 Hb_000173_400 0.0810851841 - - PREDICTED: pentatricopeptide repeat-containing protein At5g18950 [Jatropha curcas]
19 Hb_002039_010 0.0811243597 transcription factor TF Family: C3H PREDICTED: zinc finger CCCH domain-containing protein 48-like [Jatropha curcas]
20 Hb_004204_080 0.0843371068 - - diacylglycerol kinase, theta, putative [Ricinus communis]

Gene co-expression network

sample Hb_004055_040 Hb_004055_040 Hb_002928_060 Hb_002928_060 Hb_004055_040--Hb_002928_060 Hb_005730_030 Hb_005730_030 Hb_004055_040--Hb_005730_030 Hb_001366_040 Hb_001366_040 Hb_004055_040--Hb_001366_040 Hb_001871_040 Hb_001871_040 Hb_004055_040--Hb_001871_040 Hb_000244_250 Hb_000244_250 Hb_004055_040--Hb_000244_250 Hb_000915_050 Hb_000915_050 Hb_004055_040--Hb_000915_050 Hb_002928_060--Hb_005730_030 Hb_002874_070 Hb_002874_070 Hb_002928_060--Hb_002874_070 Hb_000230_330 Hb_000230_330 Hb_002928_060--Hb_000230_330 Hb_002928_060--Hb_001871_040 Hb_003362_040 Hb_003362_040 Hb_002928_060--Hb_003362_040 Hb_140171_010 Hb_140171_010 Hb_005730_030--Hb_140171_010 Hb_005730_030--Hb_000244_250 Hb_022408_010 Hb_022408_010 Hb_005730_030--Hb_022408_010 Hb_004204_080 Hb_004204_080 Hb_005730_030--Hb_004204_080 Hb_002798_040 Hb_002798_040 Hb_001366_040--Hb_002798_040 Hb_004452_100 Hb_004452_100 Hb_001366_040--Hb_004452_100 Hb_031754_010 Hb_031754_010 Hb_001366_040--Hb_031754_010 Hb_001504_160 Hb_001504_160 Hb_001366_040--Hb_001504_160 Hb_000327_310 Hb_000327_310 Hb_001366_040--Hb_000327_310 Hb_123777_030 Hb_123777_030 Hb_001871_040--Hb_123777_030 Hb_004096_020 Hb_004096_020 Hb_001871_040--Hb_004096_020 Hb_063047_010 Hb_063047_010 Hb_001871_040--Hb_063047_010 Hb_003406_040 Hb_003406_040 Hb_001871_040--Hb_003406_040 Hb_000005_380 Hb_000005_380 Hb_000244_250--Hb_000005_380 Hb_000244_250--Hb_000915_050 Hb_007586_030 Hb_007586_030 Hb_000244_250--Hb_007586_030 Hb_000244_250--Hb_022408_010 Hb_001541_020 Hb_001541_020 Hb_000244_250--Hb_001541_020 Hb_000244_250--Hb_003362_040 Hb_000915_050--Hb_003362_040 Hb_000184_130 Hb_000184_130 Hb_000915_050--Hb_000184_130 Hb_000283_070 Hb_000283_070 Hb_000915_050--Hb_000283_070 Hb_004204_020 Hb_004204_020 Hb_000915_050--Hb_004204_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
66.0647 35.7372 12.4335 13.8271 63.2962 80.3198
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
33.3218 20.0253 54.0607 26.4703 15.5931

CAGE analysis