Hb_004055_050

Information

Type -
Description -
Location Contig4055: 39687-44853
Sequence    

Annotation

kegg
ID rcu:RCOM_0655090
description zeta-coat protein, putative
nr
ID XP_012068947.1
description PREDICTED: coatomer subunit zeta-1-like [Jatropha curcas]
swissprot
ID Q940S5
description Coatomer subunit zeta-1 OS=Arabidopsis thaliana GN=At1g60970 PE=2 SV=1
trembl
ID A0A067KXA2
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_24746 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_40212: 40602-41399 , PASA_asmbl_40213: 45777-47061
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_004055_050 0.0 - - PREDICTED: coatomer subunit zeta-1-like [Jatropha curcas]
2 Hb_000622_110 0.0797409822 - - cmp-sialic acid transporter, putative [Ricinus communis]
3 Hb_001250_050 0.0959819371 - - PREDICTED: uncharacterized protein LOC105644623 isoform X1 [Jatropha curcas]
4 Hb_005535_080 0.0999414813 - - hypothetical protein CICLE_v10012766mg [Citrus clementina]
5 Hb_081599_010 0.1004015848 - - conserved hypothetical protein [Ricinus communis]
6 Hb_003777_030 0.1005833114 - - Exocyst complex component, putative [Ricinus communis]
7 Hb_000665_170 0.1042067746 - - PREDICTED: probable beta-1,3-galactosyltransferase 10 [Jatropha curcas]
8 Hb_002740_090 0.1044284218 - - PREDICTED: putative membrane-bound O-acyltransferase C24H6.01c [Jatropha curcas]
9 Hb_000703_330 0.1049716372 - - conserved hypothetical protein [Ricinus communis]
10 Hb_122548_010 0.1059675304 - - acyl-CoA oxidase, putative [Ricinus communis]
11 Hb_002486_050 0.1084936074 - - Multiple inositol polyphosphate phosphatase 1 precursor, putative [Ricinus communis]
12 Hb_000836_300 0.1091938878 - - caax prenyl protease ste24, putative [Ricinus communis]
13 Hb_006502_030 0.109433232 - - PREDICTED: probable kinetochore protein ndc80 [Jatropha curcas]
14 Hb_001227_120 0.1095798712 transcription factor TF Family: C2H2 Histone deacetylase 2a, putative [Ricinus communis]
15 Hb_001633_080 0.1099485324 - - PREDICTED: V-type proton ATPase subunit C [Gossypium raimondii]
16 Hb_006468_010 0.1105870224 - - PREDICTED: eukaryotic translation initiation factor isoform 4G-1 isoform X1 [Jatropha curcas]
17 Hb_115137_010 0.1107722854 - - PREDICTED: probable protein S-acyltransferase 23 isoform X2 [Jatropha curcas]
18 Hb_002740_080 0.1112238724 - - flap endonuclease-1, putative [Ricinus communis]
19 Hb_000258_040 0.112522262 - - PREDICTED: probable receptor-like protein kinase At3g55450 [Jatropha curcas]
20 Hb_000753_160 0.1137485553 - - PREDICTED: uncharacterized protein LOC105640669 [Jatropha curcas]

Gene co-expression network

sample Hb_004055_050 Hb_004055_050 Hb_000622_110 Hb_000622_110 Hb_004055_050--Hb_000622_110 Hb_001250_050 Hb_001250_050 Hb_004055_050--Hb_001250_050 Hb_005535_080 Hb_005535_080 Hb_004055_050--Hb_005535_080 Hb_081599_010 Hb_081599_010 Hb_004055_050--Hb_081599_010 Hb_003777_030 Hb_003777_030 Hb_004055_050--Hb_003777_030 Hb_000665_170 Hb_000665_170 Hb_004055_050--Hb_000665_170 Hb_000256_230 Hb_000256_230 Hb_000622_110--Hb_000256_230 Hb_005062_110 Hb_005062_110 Hb_000622_110--Hb_005062_110 Hb_002486_050 Hb_002486_050 Hb_000622_110--Hb_002486_050 Hb_000926_340 Hb_000926_340 Hb_000622_110--Hb_000926_340 Hb_003209_130 Hb_003209_130 Hb_000622_110--Hb_003209_130 Hb_086639_080 Hb_086639_080 Hb_000622_110--Hb_086639_080 Hb_001250_050--Hb_003777_030 Hb_002687_180 Hb_002687_180 Hb_001250_050--Hb_002687_180 Hb_001279_190 Hb_001279_190 Hb_001250_050--Hb_001279_190 Hb_000753_160 Hb_000753_160 Hb_001250_050--Hb_000753_160 Hb_002739_120 Hb_002739_120 Hb_001250_050--Hb_002739_120 Hb_008289_040 Hb_008289_040 Hb_001250_050--Hb_008289_040 Hb_005535_080--Hb_003209_130 Hb_005381_020 Hb_005381_020 Hb_005535_080--Hb_005381_020 Hb_005535_080--Hb_002486_050 Hb_000395_040 Hb_000395_040 Hb_005535_080--Hb_000395_040 Hb_005535_080--Hb_000622_110 Hb_007919_110 Hb_007919_110 Hb_005535_080--Hb_007919_110 Hb_002740_080 Hb_002740_080 Hb_081599_010--Hb_002740_080 Hb_001227_120 Hb_001227_120 Hb_081599_010--Hb_001227_120 Hb_000152_600 Hb_000152_600 Hb_081599_010--Hb_000152_600 Hb_003498_100 Hb_003498_100 Hb_081599_010--Hb_003498_100 Hb_081599_010--Hb_001279_190 Hb_001269_130 Hb_001269_130 Hb_081599_010--Hb_001269_130 Hb_003777_030--Hb_000665_170 Hb_007545_010 Hb_007545_010 Hb_003777_030--Hb_007545_010 Hb_132082_010 Hb_132082_010 Hb_003777_030--Hb_132082_010 Hb_000815_300 Hb_000815_300 Hb_003777_030--Hb_000815_300 Hb_003777_030--Hb_000256_230 Hb_000665_170--Hb_000256_230 Hb_010672_020 Hb_010672_020 Hb_000665_170--Hb_010672_020 Hb_000665_170--Hb_003209_130 Hb_000665_170--Hb_007545_010 Hb_000389_030 Hb_000389_030 Hb_000665_170--Hb_000389_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.701807 1.03976 1.76762 2.58226 0.408792 0.956827
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.553665 0.870669 0.393043 1.41059 0.872204

CAGE analysis