Hb_004055_070

Information

Type -
Description -
Location Contig4055: 49857-50927
Sequence    

Annotation

kegg
ID cit:102623374
description uncharacterized LOC102623374
nr
ID XP_012068950.1
description PREDICTED: uncharacterized protein LOC105631439 isoform X2 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067L9K2
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_24748 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_40214: 49854-50953
cDNA
(Sanger)
(ID:Location)		 026_F23.ab1: 49854-50951

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_004055_070 0.0 - - PREDICTED: uncharacterized protein LOC105631439 isoform X2 [Jatropha curcas]
2 Hb_006541_010 0.0742892617 - - PREDICTED: uncharacterized protein LOC105637261 isoform X1 [Jatropha curcas]
3 Hb_007576_170 0.0768009153 - - conserved hypothetical protein [Ricinus communis]
4 Hb_002000_140 0.0833676726 - - PREDICTED: thioredoxin Y2, chloroplastic [Jatropha curcas]
5 Hb_000996_140 0.0838454978 - - PREDICTED: EKC/KEOPS complex subunit Tprkb [Jatropha curcas]
6 Hb_004899_370 0.0852326379 - - hypothetical protein CICLE_v10009013mg [Citrus clementina]
7 Hb_009182_010 0.0871266469 - - PREDICTED: vacuolar protein sorting-associated protein 20 homolog 2-like [Jatropha curcas]
8 Hb_000102_020 0.0883299037 - - hypothetical protein JCGZ_11933 [Jatropha curcas]
9 Hb_007441_040 0.0899096941 - - PREDICTED: protein mago nashi homolog [Jatropha curcas]
10 Hb_001124_090 0.0912557514 - - acyl carrier protein, putative [Ricinus communis]
11 Hb_001476_080 0.0931702865 - - PREDICTED: eukaryotic translation initiation factor 5A-like [Jatropha curcas]
12 Hb_026314_020 0.0934596498 - - hypothetical protein POPTR_0019s10050g [Populus trichocarpa]
13 Hb_000431_070 0.0939790921 - - Mitochondrial import receptor subunit TOM20, putative [Ricinus communis]
14 Hb_094608_010 0.0957180292 - - PREDICTED: uncharacterized protein LOC105630444 isoform X3 [Jatropha curcas]
15 Hb_004459_040 0.0965877925 - - PREDICTED: uncharacterized protein LOC105649649 [Jatropha curcas]
16 Hb_000656_170 0.0967671095 - - lsm1, putative [Ricinus communis]
17 Hb_002798_020 0.0972471218 - - PREDICTED: uncharacterized protein LOC105647735 [Jatropha curcas]
18 Hb_000982_090 0.098259972 - - PREDICTED: zinc finger HIT domain-containing protein 3 [Jatropha curcas]
19 Hb_033153_060 0.0982610458 - - Transcription elongation factor, putative [Ricinus communis]
20 Hb_001616_040 0.0986181618 - - PREDICTED: uncharacterized protein LOC105644362 [Jatropha curcas]

Gene co-expression network

sample Hb_004055_070 Hb_004055_070 Hb_006541_010 Hb_006541_010 Hb_004055_070--Hb_006541_010 Hb_007576_170 Hb_007576_170 Hb_004055_070--Hb_007576_170 Hb_002000_140 Hb_002000_140 Hb_004055_070--Hb_002000_140 Hb_000996_140 Hb_000996_140 Hb_004055_070--Hb_000996_140 Hb_004899_370 Hb_004899_370 Hb_004055_070--Hb_004899_370 Hb_009182_010 Hb_009182_010 Hb_004055_070--Hb_009182_010 Hb_033153_060 Hb_033153_060 Hb_006541_010--Hb_033153_060 Hb_001616_040 Hb_001616_040 Hb_006541_010--Hb_001616_040 Hb_004459_040 Hb_004459_040 Hb_006541_010--Hb_004459_040 Hb_006541_010--Hb_007576_170 Hb_011644_030 Hb_011644_030 Hb_006541_010--Hb_011644_030 Hb_007441_040 Hb_007441_040 Hb_006541_010--Hb_007441_040 Hb_007576_170--Hb_004459_040 Hb_000431_070 Hb_000431_070 Hb_007576_170--Hb_000431_070 Hb_002798_020 Hb_002798_020 Hb_007576_170--Hb_002798_020 Hb_007576_170--Hb_033153_060 Hb_017225_020 Hb_017225_020 Hb_007576_170--Hb_017225_020 Hb_000189_240 Hb_000189_240 Hb_002000_140--Hb_000189_240 Hb_002303_060 Hb_002303_060 Hb_002000_140--Hb_002303_060 Hb_002000_140--Hb_000431_070 Hb_001512_080 Hb_001512_080 Hb_002000_140--Hb_001512_080 Hb_001329_150 Hb_001329_150 Hb_002000_140--Hb_001329_150 Hb_005269_080 Hb_005269_080 Hb_002000_140--Hb_005269_080 Hb_007441_330 Hb_007441_330 Hb_000996_140--Hb_007441_330 Hb_026053_020 Hb_026053_020 Hb_000996_140--Hb_026053_020 Hb_010175_040 Hb_010175_040 Hb_000996_140--Hb_010175_040 Hb_003226_100 Hb_003226_100 Hb_000996_140--Hb_003226_100 Hb_002768_030 Hb_002768_030 Hb_000996_140--Hb_002768_030 Hb_003018_010 Hb_003018_010 Hb_000996_140--Hb_003018_010 Hb_004143_150 Hb_004143_150 Hb_004899_370--Hb_004143_150 Hb_023278_020 Hb_023278_020 Hb_004899_370--Hb_023278_020 Hb_000001_060 Hb_000001_060 Hb_004899_370--Hb_000001_060 Hb_003151_040 Hb_003151_040 Hb_004899_370--Hb_003151_040 Hb_004127_020 Hb_004127_020 Hb_004899_370--Hb_004127_020 Hb_009615_070 Hb_009615_070 Hb_004899_370--Hb_009615_070 Hb_009182_010--Hb_007441_040 Hb_000102_020 Hb_000102_020 Hb_009182_010--Hb_000102_020 Hb_143766_010 Hb_143766_010 Hb_009182_010--Hb_143766_010 Hb_000982_090 Hb_000982_090 Hb_009182_010--Hb_000982_090 Hb_091433_020 Hb_091433_020 Hb_009182_010--Hb_091433_020 Hb_004157_030 Hb_004157_030 Hb_009182_010--Hb_004157_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
52.2578 24.9252 73.6796 78.5273 31.6934 98.9069
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
127.96 183.716 87.203 44.4381 54.5203

CAGE analysis