Hb_004055_080

Information

Type -
Description -
Location Contig4055: 58520-61038
Sequence    

Annotation

kegg
ID rcu:RCOM_0655220
description calmodulin binding protein, putative
nr
ID XP_002521383.1
description calmodulin binding protein, putative [Ricinus communis]
swissprot
ID -
description -
trembl
ID B9S5W4
description Calmodulin binding protein, putative OS=Ricinus communis GN=RCOM_0655220 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_004055_080 0.0 - - calmodulin binding protein, putative [Ricinus communis]
2 Hb_111693_010 0.0368248602 - - hypothetical protein JCGZ_21650 [Jatropha curcas]
3 Hb_000220_170 0.084121542 - - -
4 Hb_058526_010 0.0854980548 - - -
5 Hb_000029_420 0.0947660828 - - PREDICTED: putative lipid-transfer protein DIR1 [Jatropha curcas]
6 Hb_001473_100 0.1016206649 - - chalcone synthase 1 [Jatropha curcas]
7 Hb_005653_100 0.1115596849 - - hypothetical protein POPTR_0004s19580g [Populus trichocarpa]
8 Hb_111985_160 0.1118558431 - - hypothetical protein B456_010G008900 [Gossypium raimondii]
9 Hb_003064_010 0.1157696808 - - Senescence-related gene 1 [Theobroma cacao]
10 Hb_001609_080 0.1260031011 - - hypothetical protein POPTR_0017s05660g [Populus trichocarpa]
11 Hb_001789_010 0.1275291635 - - hypothetical protein POPTR_0015s13020g [Populus trichocarpa]
12 Hb_111985_120 0.1287753149 - - dihydroflavonol-4-reductase [Vitis rotundifolia]
13 Hb_003166_040 0.1307119864 - - PREDICTED: probable indole-3-acetic acid-amido synthetase GH3.1 [Jatropha curcas]
14 Hb_000194_080 0.1313940738 - - hypothetical protein JCGZ_18743 [Jatropha curcas]
15 Hb_001377_480 0.1359592731 transcription factor TF Family: MYB Myb domain protein 7, putative [Theobroma cacao]
16 Hb_000631_130 0.1371513429 - - PREDICTED: flavonoid 3'-monooxygenase [Jatropha curcas]
17 Hb_127743_030 0.1375333027 - - amino acid transporter, putative [Ricinus communis]
18 Hb_000288_140 0.1386878171 - - PREDICTED: putative cysteine-rich receptor-like protein kinase 35 [Jatropha curcas]
19 Hb_000038_090 0.1421322255 transcription factor TF Family: NAC hypothetical protein POPTR_0002s05820g [Populus trichocarpa]
20 Hb_007747_030 0.1425359042 - - PREDICTED: WD repeat-containing protein LWD2-like [Jatropha curcas]

Gene co-expression network

sample Hb_004055_080 Hb_004055_080 Hb_111693_010 Hb_111693_010 Hb_004055_080--Hb_111693_010 Hb_000220_170 Hb_000220_170 Hb_004055_080--Hb_000220_170 Hb_058526_010 Hb_058526_010 Hb_004055_080--Hb_058526_010 Hb_000029_420 Hb_000029_420 Hb_004055_080--Hb_000029_420 Hb_001473_100 Hb_001473_100 Hb_004055_080--Hb_001473_100 Hb_005653_100 Hb_005653_100 Hb_004055_080--Hb_005653_100 Hb_111693_010--Hb_000220_170 Hb_111693_010--Hb_058526_010 Hb_111693_010--Hb_005653_100 Hb_001789_010 Hb_001789_010 Hb_111693_010--Hb_001789_010 Hb_111693_010--Hb_000029_420 Hb_002553_100 Hb_002553_100 Hb_000220_170--Hb_002553_100 Hb_000220_170--Hb_001789_010 Hb_111985_120 Hb_111985_120 Hb_000220_170--Hb_111985_120 Hb_000220_170--Hb_058526_010 Hb_003166_040 Hb_003166_040 Hb_058526_010--Hb_003166_040 Hb_127743_030 Hb_127743_030 Hb_058526_010--Hb_127743_030 Hb_007747_030 Hb_007747_030 Hb_058526_010--Hb_007747_030 Hb_007483_030 Hb_007483_030 Hb_058526_010--Hb_007483_030 Hb_002374_110 Hb_002374_110 Hb_058526_010--Hb_002374_110 Hb_000194_080 Hb_000194_080 Hb_000029_420--Hb_000194_080 Hb_111985_160 Hb_111985_160 Hb_000029_420--Hb_111985_160 Hb_003064_010 Hb_003064_010 Hb_000029_420--Hb_003064_010 Hb_001377_480 Hb_001377_480 Hb_000029_420--Hb_001377_480 Hb_000631_130 Hb_000631_130 Hb_001473_100--Hb_000631_130 Hb_025469_040 Hb_025469_040 Hb_001473_100--Hb_025469_040 Hb_131864_020 Hb_131864_020 Hb_001473_100--Hb_131864_020 Hb_000038_090 Hb_000038_090 Hb_001473_100--Hb_000038_090 Hb_007044_070 Hb_007044_070 Hb_001473_100--Hb_007044_070 Hb_001609_080 Hb_001609_080 Hb_005653_100--Hb_001609_080 Hb_000407_110 Hb_000407_110 Hb_005653_100--Hb_000407_110 Hb_020902_020 Hb_020902_020 Hb_005653_100--Hb_020902_020 Hb_006919_010 Hb_006919_010 Hb_005653_100--Hb_006919_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.021696 0.039541 0.0199534 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.140556 0

CAGE analysis