Hb_004055_090

Information

Type -
Description -
Location Contig4055: 62021-64713
Sequence    

Annotation

kegg
ID pop:POPTR_0003s04240g
description POPTRDRAFT_756641; calmodulin-binding family protein
nr
ID XP_012068952.1
description PREDICTED: protein IQ-DOMAIN 1 [Jatropha curcas]
swissprot
ID Q9SF32
description Protein IQ-DOMAIN 1 OS=Arabidopsis thaliana GN=IQD1 PE=1 SV=1
trembl
ID A0A067KX46
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_24750 PE=4 SV=1
Gene Ontology
ID GO:0016772
description protein iq-domain 1-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_40215: 62392-64900
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_004055_090 0.0 - - PREDICTED: protein IQ-DOMAIN 1 [Jatropha curcas]
2 Hb_000853_250 0.0944785944 - - Cellulose synthase A catalytic subunit 3 [UDP-forming], putative [Ricinus communis]
3 Hb_000522_160 0.1001101005 - - PREDICTED: probable serine/threonine-protein kinase At5g41260 [Jatropha curcas]
4 Hb_003754_020 0.1018399145 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
5 Hb_000345_230 0.1059508717 - - -
6 Hb_002276_250 0.106878526 - - PREDICTED: WD repeat and HMG-box DNA-binding protein 1 isoform X2 [Jatropha curcas]
7 Hb_000977_190 0.10863551 - - conserved hypothetical protein [Ricinus communis]
8 Hb_001141_440 0.1092206725 - - PREDICTED: uncharacterized protein LOC105631977 [Jatropha curcas]
9 Hb_000162_190 0.1122274646 - - PREDICTED: thaumatin-like protein 1b [Jatropha curcas]
10 Hb_004330_040 0.1144197158 - - conserved hypothetical protein [Ricinus communis]
11 Hb_000805_270 0.1209596338 - - PREDICTED: expansin-A4 [Gossypium raimondii]
12 Hb_000506_050 0.1217049117 - - PREDICTED: thymidine kinase [Jatropha curcas]
13 Hb_000093_090 0.1228705657 - - PREDICTED: UDP-arabinopyranose mutase 3 [Populus euphratica]
14 Hb_003935_040 0.1228902526 transcription factor TF Family: MIKC PREDICTED: MADS-box protein SVP [Jatropha curcas]
15 Hb_025787_020 0.1250682923 - - PREDICTED: multiple C2 and transmembrane domain-containing protein 1 [Jatropha curcas]
16 Hb_000310_110 0.125242625 - - PREDICTED: probable trehalose-phosphate phosphatase F isoform X1 [Jatropha curcas]
17 Hb_000062_280 0.1272322116 - - plant mitotic spindle assembly checkpoint protein mad2, putative [Ricinus communis]
18 Hb_000020_050 0.1273796295 - - PREDICTED: expansin-A6 [Jatropha curcas]
19 Hb_009252_080 0.1314732514 - - Polygalacturonase-1 non-catalytic subunit beta precursor, putative [Ricinus communis]
20 Hb_006810_040 0.1324798254 - - Aspartic proteinase nepenthesin-1 precursor, putative [Ricinus communis]

Gene co-expression network

sample Hb_004055_090 Hb_004055_090 Hb_000853_250 Hb_000853_250 Hb_004055_090--Hb_000853_250 Hb_000522_160 Hb_000522_160 Hb_004055_090--Hb_000522_160 Hb_003754_020 Hb_003754_020 Hb_004055_090--Hb_003754_020 Hb_000345_230 Hb_000345_230 Hb_004055_090--Hb_000345_230 Hb_002276_250 Hb_002276_250 Hb_004055_090--Hb_002276_250 Hb_000977_190 Hb_000977_190 Hb_004055_090--Hb_000977_190 Hb_001141_440 Hb_001141_440 Hb_000853_250--Hb_001141_440 Hb_000062_280 Hb_000062_280 Hb_000853_250--Hb_000062_280 Hb_000162_190 Hb_000162_190 Hb_000853_250--Hb_000162_190 Hb_000017_250 Hb_000017_250 Hb_000853_250--Hb_000017_250 Hb_025787_020 Hb_025787_020 Hb_000853_250--Hb_025787_020 Hb_006810_040 Hb_006810_040 Hb_000522_160--Hb_006810_040 Hb_006693_010 Hb_006693_010 Hb_000522_160--Hb_006693_010 Hb_005332_030 Hb_005332_030 Hb_000522_160--Hb_005332_030 Hb_159809_040 Hb_159809_040 Hb_000522_160--Hb_159809_040 Hb_001971_040 Hb_001971_040 Hb_000522_160--Hb_001971_040 Hb_001348_100 Hb_001348_100 Hb_000522_160--Hb_001348_100 Hb_004330_040 Hb_004330_040 Hb_003754_020--Hb_004330_040 Hb_001473_060 Hb_001473_060 Hb_003754_020--Hb_001473_060 Hb_032260_060 Hb_032260_060 Hb_003754_020--Hb_032260_060 Hb_003754_020--Hb_002276_250 Hb_004357_030 Hb_004357_030 Hb_003754_020--Hb_004357_030 Hb_000345_230--Hb_159809_040 Hb_003935_040 Hb_003935_040 Hb_000345_230--Hb_003935_040 Hb_009252_080 Hb_009252_080 Hb_000345_230--Hb_009252_080 Hb_000345_230--Hb_001141_440 Hb_001709_090 Hb_001709_090 Hb_000345_230--Hb_001709_090 Hb_000345_230--Hb_000522_160 Hb_000431_100 Hb_000431_100 Hb_002276_250--Hb_000431_100 Hb_000805_270 Hb_000805_270 Hb_002276_250--Hb_000805_270 Hb_000490_040 Hb_000490_040 Hb_002276_250--Hb_000490_040 Hb_000046_240 Hb_000046_240 Hb_002276_250--Hb_000046_240 Hb_002686_320 Hb_002686_320 Hb_000977_190--Hb_002686_320 Hb_000977_190--Hb_005332_030 Hb_000977_190--Hb_159809_040 Hb_000538_290 Hb_000538_290 Hb_000977_190--Hb_000538_290 Hb_000140_200 Hb_000140_200 Hb_000977_190--Hb_000140_200 Hb_020025_030 Hb_020025_030 Hb_000977_190--Hb_020025_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0729838 0.150158 3.73084 5.54479 0.0136714 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0.0261751 0 1.34885 0.874078

CAGE analysis