Hb_004055_120

Information

Type -
Description -
Location Contig4055: 92428-98143
Sequence    

Annotation

kegg
ID pop:POPTR_0001s20350g
description acid phosphatase survival protein SurE
nr
ID XP_012068957.1
description PREDICTED: uncharacterized protein LOC105631443 [Jatropha curcas]
swissprot
ID Q5HWH7
description 5'-nucleotidase SurE OS=Campylobacter jejuni (strain RM1221) GN=surE PE=3 SV=1
trembl
ID A0A067L9K5
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_24753 PE=3 SV=1
Gene Ontology
ID GO:0008253
description acid phosphatase survival protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_40218: 82132-97927 , PASA_asmbl_40219: 82132-98035 , PASA_asmbl_40220: 92247-92436
cDNA
(Sanger)
(ID:Location)		 045_D21.ab1: 93354-97859 , 047_E16.ab1: 93378-97859

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_004055_120 0.0 - - PREDICTED: uncharacterized protein LOC105631443 [Jatropha curcas]
2 Hb_000256_150 0.0706863932 - - PREDICTED: trafficking protein particle complex II-specific subunit 120 homolog [Jatropha curcas]
3 Hb_000787_160 0.0745301786 - - PREDICTED: GDP-mannose transporter GONST1 isoform X1 [Jatropha curcas]
4 Hb_000197_020 0.074668193 - - PREDICTED: protein RER1A [Jatropha curcas]
5 Hb_000917_130 0.0755758843 - - PREDICTED: uncharacterized protein LOC105635730 [Jatropha curcas]
6 Hb_003998_040 0.0808503126 - - organic anion transporter, putative [Ricinus communis]
7 Hb_000300_270 0.085141473 - - cationic amino acid transporter, putative [Ricinus communis]
8 Hb_000069_640 0.086628629 - - PREDICTED: tubulin gamma-1 chain [Vitis vinifera]
9 Hb_000477_100 0.0883233843 - - PREDICTED: GDP-mannose transporter GONST4 [Jatropha curcas]
10 Hb_004102_170 0.0885946075 - - PREDICTED: lys-63-specific deubiquitinase BRCC36-like [Jatropha curcas]
11 Hb_005993_010 0.0888136657 - - PREDICTED: protein transport protein SEC13 homolog B [Jatropha curcas]
12 Hb_008970_030 0.0891548175 - - arf gtpase-activating protein, putative [Ricinus communis]
13 Hb_000049_020 0.0901057864 - - Ras-GTPase-activating protein-binding protein, putative [Ricinus communis]
14 Hb_005218_020 0.0905537092 - - Uncharacterized protein isoform 3 [Theobroma cacao]
15 Hb_007481_010 0.0913724129 - - PREDICTED: TBC1 domain family member 22B [Jatropha curcas]
16 Hb_008748_030 0.0914650524 - - conserved hypothetical protein [Ricinus communis]
17 Hb_005701_120 0.0918430627 - - PREDICTED: V-type proton ATPase 16 kDa proteolipid subunit [Cucumis sativus]
18 Hb_004705_170 0.0922331641 - - PREDICTED: ubiquitin thioesterase otubain-like [Jatropha curcas]
19 Hb_001609_040 0.0932465174 - - hypothetical protein POPTR_0017s05650g [Populus trichocarpa]
20 Hb_000066_030 0.0948016102 - - PREDICTED: uncharacterized protein LOC105643898 isoform X2 [Jatropha curcas]

Gene co-expression network

sample Hb_004055_120 Hb_004055_120 Hb_000256_150 Hb_000256_150 Hb_004055_120--Hb_000256_150 Hb_000787_160 Hb_000787_160 Hb_004055_120--Hb_000787_160 Hb_000197_020 Hb_000197_020 Hb_004055_120--Hb_000197_020 Hb_000917_130 Hb_000917_130 Hb_004055_120--Hb_000917_130 Hb_003998_040 Hb_003998_040 Hb_004055_120--Hb_003998_040 Hb_000300_270 Hb_000300_270 Hb_004055_120--Hb_000300_270 Hb_000049_020 Hb_000049_020 Hb_000256_150--Hb_000049_020 Hb_000256_150--Hb_000300_270 Hb_007481_010 Hb_007481_010 Hb_000256_150--Hb_007481_010 Hb_001269_330 Hb_001269_330 Hb_000256_150--Hb_001269_330 Hb_009569_040 Hb_009569_040 Hb_000256_150--Hb_009569_040 Hb_004452_110 Hb_004452_110 Hb_000256_150--Hb_004452_110 Hb_004102_170 Hb_004102_170 Hb_000787_160--Hb_004102_170 Hb_000345_160 Hb_000345_160 Hb_000787_160--Hb_000345_160 Hb_005015_060 Hb_005015_060 Hb_000787_160--Hb_005015_060 Hb_000322_080 Hb_000322_080 Hb_000787_160--Hb_000322_080 Hb_004705_170 Hb_004705_170 Hb_000787_160--Hb_004705_170 Hb_001662_100 Hb_001662_100 Hb_000787_160--Hb_001662_100 Hb_000066_030 Hb_000066_030 Hb_000197_020--Hb_000066_030 Hb_000197_020--Hb_003998_040 Hb_000705_230 Hb_000705_230 Hb_000197_020--Hb_000705_230 Hb_010407_140 Hb_010407_140 Hb_000197_020--Hb_010407_140 Hb_011214_160 Hb_011214_160 Hb_000197_020--Hb_011214_160 Hb_003529_030 Hb_003529_030 Hb_000917_130--Hb_003529_030 Hb_000917_130--Hb_003998_040 Hb_005218_020 Hb_005218_020 Hb_000917_130--Hb_005218_020 Hb_000917_130--Hb_000256_150 Hb_000477_100 Hb_000477_100 Hb_000917_130--Hb_000477_100 Hb_003998_040--Hb_000066_030 Hb_003998_040--Hb_005218_020 Hb_003998_040--Hb_011214_160 Hb_007765_040 Hb_007765_040 Hb_003998_040--Hb_007765_040 Hb_001633_080 Hb_001633_080 Hb_003998_040--Hb_001633_080 Hb_000371_090 Hb_000371_090 Hb_003998_040--Hb_000371_090 Hb_000300_270--Hb_000049_020 Hb_002046_160 Hb_002046_160 Hb_000300_270--Hb_002046_160 Hb_002883_030 Hb_002883_030 Hb_000300_270--Hb_002883_030 Hb_000300_270--Hb_004452_110 Hb_000300_270--Hb_000345_160
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
4.81208 5.60304 8.57708 16.6755 3.51254 7.61062
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
5.72827 6.34734 6.89057 6.75485 8.87193

CAGE analysis