Hb_004055_150

Information

Type -
Description -
Location Contig4055: 110903-112150
Sequence    

Annotation

kegg
ID rcu:RCOM_0655620
description hypothetical protein
nr
ID XP_002521393.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID -
description -
trembl
ID B9S5X4
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0655620 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_40223: 111444-112114 , PASA_asmbl_40224: 111506-112150 , PASA_asmbl_40225: 111444-111898
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_004055_150 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_001926_030 0.0418353423 - - PREDICTED: apoptosis inhibitor 5 [Jatropha curcas]
3 Hb_002686_250 0.0418710954 - - PREDICTED: U11/U12 small nuclear ribonucleoprotein 65 kDa protein isoform X1 [Jatropha curcas]
4 Hb_000853_230 0.0542210578 - - syntaxin, putative [Ricinus communis]
5 Hb_006620_020 0.0544298205 - - PREDICTED: uncharacterized protein LOC105638878 [Jatropha curcas]
6 Hb_006960_050 0.0573152322 - - PREDICTED: PRKR-interacting protein 1 [Jatropha curcas]
7 Hb_005993_050 0.0596251491 - - Protein AFR, putative [Ricinus communis]
8 Hb_131646_010 0.0637407498 - - protein arginine n-methyltransferase, putative [Ricinus communis]
9 Hb_009646_030 0.0649124144 - - conserved hypothetical protein [Ricinus communis]
10 Hb_002835_230 0.0653556194 - - leucine-rich repeat-containing protein, putative [Ricinus communis]
11 Hb_000879_200 0.0656433666 - - PREDICTED: A-kinase anchor protein 17A [Jatropha curcas]
12 Hb_032208_040 0.0661871553 - - PREDICTED: serine/arginine-rich SC35-like splicing factor SCL33 [Populus euphratica]
13 Hb_002078_020 0.0674895205 - - PREDICTED: proteasome subunit beta type-5 [Jatropha curcas]
14 Hb_004785_100 0.0675210253 - - conserved hypothetical protein [Ricinus communis]
15 Hb_033720_010 0.0686277768 - - PREDICTED: uncharacterized protein LOC105648843 [Jatropha curcas]
16 Hb_007007_060 0.0705515007 - - PREDICTED: peroxisome biogenesis protein 16-like isoform X1 [Jatropha curcas]
17 Hb_031527_020 0.0708902712 - - PREDICTED: pre-mRNA-splicing factor 38B isoform X1 [Jatropha curcas]
18 Hb_000794_050 0.0711627518 transcription factor TF Family: C3H PREDICTED: zinc finger CCCH domain-containing protein 12 [Jatropha curcas]
19 Hb_002078_110 0.0712666393 - - PREDICTED: nuclear pore complex protein NUP54 [Jatropha curcas]
20 Hb_106552_050 0.0721062809 - - PREDICTED: uncharacterized protein LOC105642134 [Jatropha curcas]

Gene co-expression network

sample Hb_004055_150 Hb_004055_150 Hb_001926_030 Hb_001926_030 Hb_004055_150--Hb_001926_030 Hb_002686_250 Hb_002686_250 Hb_004055_150--Hb_002686_250 Hb_000853_230 Hb_000853_230 Hb_004055_150--Hb_000853_230 Hb_006620_020 Hb_006620_020 Hb_004055_150--Hb_006620_020 Hb_006960_050 Hb_006960_050 Hb_004055_150--Hb_006960_050 Hb_005993_050 Hb_005993_050 Hb_004055_150--Hb_005993_050 Hb_000879_200 Hb_000879_200 Hb_001926_030--Hb_000879_200 Hb_001926_030--Hb_002686_250 Hb_001926_030--Hb_006620_020 Hb_001926_030--Hb_000853_230 Hb_000010_400 Hb_000010_400 Hb_001926_030--Hb_000010_400 Hb_131646_010 Hb_131646_010 Hb_002686_250--Hb_131646_010 Hb_003029_030 Hb_003029_030 Hb_002686_250--Hb_003029_030 Hb_004785_100 Hb_004785_100 Hb_002686_250--Hb_004785_100 Hb_002078_110 Hb_002078_110 Hb_002686_250--Hb_002078_110 Hb_000853_230--Hb_006620_020 Hb_000853_230--Hb_000879_200 Hb_000390_180 Hb_000390_180 Hb_000853_230--Hb_000390_180 Hb_033720_010 Hb_033720_010 Hb_000853_230--Hb_033720_010 Hb_006620_020--Hb_000879_200 Hb_054865_100 Hb_054865_100 Hb_006620_020--Hb_054865_100 Hb_000174_110 Hb_000174_110 Hb_006620_020--Hb_000174_110 Hb_000649_070 Hb_000649_070 Hb_006960_050--Hb_000649_070 Hb_006960_050--Hb_004785_100 Hb_006960_050--Hb_006620_020 Hb_020367_050 Hb_020367_050 Hb_006960_050--Hb_020367_050 Hb_006960_050--Hb_002686_250 Hb_000029_050 Hb_000029_050 Hb_005993_050--Hb_000029_050 Hb_138596_010 Hb_138596_010 Hb_005993_050--Hb_138596_010 Hb_003609_030 Hb_003609_030 Hb_005993_050--Hb_003609_030 Hb_003680_150 Hb_003680_150 Hb_005993_050--Hb_003680_150 Hb_005993_050--Hb_000853_230
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
14.4399 9.39944 9.29366 6.08926 14.2048 11.3291
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
7.68257 8.10171 8.75587 6.84105 5.89851

CAGE analysis