Hb_004057_010

Information

Type -
Description -
Location Contig4057: 7956-11232
Sequence    

Annotation

kegg
ID rcu:RCOM_0903830
description 30S ribosomal protein S19, putative
nr
ID XP_012091319.1
description PREDICTED: uncharacterized protein LOC105649313 [Jatropha curcas]
swissprot
ID P27527
description Ribosomal protein S19, mitochondrial OS=Petunia hybrida GN=RPS19 PE=2 SV=2
trembl
ID B9RXI6
description 30S ribosomal protein S19, putative OS=Ricinus communis GN=RCOM_0903830 PE=3 SV=1
Gene Ontology
ID GO:0005840
description ribosomal protein s19

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_40236: 7989-11207
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_004057_010 0.0 - - PREDICTED: uncharacterized protein LOC105649313 [Jatropha curcas]
2 Hb_026053_020 0.076899903 - - PREDICTED: uncharacterized protein LOC105643718 [Jatropha curcas]
3 Hb_000676_390 0.0799613531 - - PREDICTED: protein FMP32, mitochondrial [Jatropha curcas]
4 Hb_018133_020 0.0830040958 - - transporter, putative [Ricinus communis]
5 Hb_001726_040 0.085291286 - - hypothetical protein CICLE_v10029230mg [Citrus clementina]
6 Hb_006198_070 0.0875847351 - - pantoate-beta-alanine ligase, putative [Ricinus communis]
7 Hb_001329_150 0.088672559 - - PREDICTED: autophagy-related protein 8i-like [Jatropha curcas]
8 Hb_003633_060 0.0909515453 - - translationally controlled tumor protein [Hevea brasiliensis]
9 Hb_131181_010 0.0910753421 - - transcription initiation factor iia (tfiia), gamma chain, putative [Ricinus communis]
10 Hb_024074_010 0.091801635 - - PREDICTED: cytochrome c [Jatropha curcas]
11 Hb_001188_030 0.0943540515 - - PREDICTED: proteasome subunit beta type-4-like [Jatropha curcas]
12 Hb_001373_060 0.0952219191 - - PREDICTED: structure-specific endonuclease subunit slx1 [Jatropha curcas]
13 Hb_001718_030 0.0995885896 - - PREDICTED: calcineurin B-like protein 9 isoform X1 [Jatropha curcas]
14 Hb_000840_180 0.1014846891 - - protein BOLA2 [Jatropha curcas]
15 Hb_001252_220 0.1024104918 - - PREDICTED: uncharacterized protein LOC105640647 [Jatropha curcas]
16 Hb_004157_020 0.1032867169 - - PREDICTED: histone H2B-like [Gossypium raimondii]
17 Hb_001053_140 0.1043923522 - - PREDICTED: ATP synthase subunit O, mitochondrial [Jatropha curcas]
18 Hb_000731_190 0.1045783451 - - PREDICTED: cardiolipin synthase (CMP-forming), mitochondrial [Jatropha curcas]
19 Hb_004846_090 0.1054322239 transcription factor TF Family: HMG HMG-box DNA-binding family protein isoform 1 [Theobroma cacao]
20 Hb_000069_700 0.1054908855 - - hypothetical protein B456_005G003200 [Gossypium raimondii]

Gene co-expression network

sample Hb_004057_010 Hb_004057_010 Hb_026053_020 Hb_026053_020 Hb_004057_010--Hb_026053_020 Hb_000676_390 Hb_000676_390 Hb_004057_010--Hb_000676_390 Hb_018133_020 Hb_018133_020 Hb_004057_010--Hb_018133_020 Hb_001726_040 Hb_001726_040 Hb_004057_010--Hb_001726_040 Hb_006198_070 Hb_006198_070 Hb_004057_010--Hb_006198_070 Hb_001329_150 Hb_001329_150 Hb_004057_010--Hb_001329_150 Hb_131181_010 Hb_131181_010 Hb_026053_020--Hb_131181_010 Hb_000189_240 Hb_000189_240 Hb_026053_020--Hb_000189_240 Hb_008071_020 Hb_008071_020 Hb_026053_020--Hb_008071_020 Hb_000996_140 Hb_000996_140 Hb_026053_020--Hb_000996_140 Hb_026053_020--Hb_018133_020 Hb_001141_140 Hb_001141_140 Hb_026053_020--Hb_001141_140 Hb_001188_030 Hb_001188_030 Hb_000676_390--Hb_001188_030 Hb_000676_390--Hb_008071_020 Hb_004889_020 Hb_004889_020 Hb_000676_390--Hb_004889_020 Hb_026889_030 Hb_026889_030 Hb_000676_390--Hb_026889_030 Hb_001931_010 Hb_001931_010 Hb_000676_390--Hb_001931_010 Hb_002540_080 Hb_002540_080 Hb_000676_390--Hb_002540_080 Hb_018133_020--Hb_131181_010 Hb_001279_080 Hb_001279_080 Hb_018133_020--Hb_001279_080 Hb_001318_260 Hb_001318_260 Hb_018133_020--Hb_001318_260 Hb_012114_070 Hb_012114_070 Hb_018133_020--Hb_012114_070 Hb_000840_180 Hb_000840_180 Hb_018133_020--Hb_000840_180 Hb_000069_700 Hb_000069_700 Hb_001726_040--Hb_000069_700 Hb_000087_130 Hb_000087_130 Hb_001726_040--Hb_000087_130 Hb_002081_030 Hb_002081_030 Hb_001726_040--Hb_002081_030 Hb_001726_040--Hb_000189_240 Hb_000735_040 Hb_000735_040 Hb_001726_040--Hb_000735_040 Hb_005843_140 Hb_005843_140 Hb_006198_070--Hb_005843_140 Hb_026527_050 Hb_026527_050 Hb_006198_070--Hb_026527_050 Hb_003669_020 Hb_003669_020 Hb_006198_070--Hb_003669_020 Hb_003540_240 Hb_003540_240 Hb_006198_070--Hb_003540_240 Hb_006355_040 Hb_006355_040 Hb_006198_070--Hb_006355_040 Hb_001053_140 Hb_001053_140 Hb_001329_150--Hb_001053_140 Hb_000419_070 Hb_000419_070 Hb_001329_150--Hb_000419_070 Hb_000571_020 Hb_000571_020 Hb_001329_150--Hb_000571_020 Hb_002000_140 Hb_002000_140 Hb_001329_150--Hb_002000_140 Hb_002303_060 Hb_002303_060 Hb_001329_150--Hb_002303_060 Hb_001329_150--Hb_000189_240
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
13.3828 9.0364 24.665 18.9783 7.13186 12.1399
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
26.8214 61.6992 28.4396 9.61489 18.6998

CAGE analysis