Hb_004058_030

Information

Type -
Description -
Location Contig4058: 44022-46709
Sequence    

Annotation

kegg
ID tcc:TCM_015542
description SPFH/Band 7/PHB domain-containing membrane-associated protein family isoform 1
nr
ID XP_012074826.1
description PREDICTED: stomatin-like protein 2, mitochondrial [Jatropha curcas]
swissprot
ID O60121
description Uncharacterized protein C16G5.07c OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPBC16G5.07c PE=3 SV=1
trembl
ID A0A067LC84
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_14924 PE=4 SV=1
Gene Ontology
ID GO:0016020
description stomatin-like protein mitochondrial

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_40243: 44642-46620
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_004058_030 0.0 - - PREDICTED: stomatin-like protein 2, mitochondrial [Jatropha curcas]
2 Hb_003304_020 0.0464129221 - - Polyadenylate-binding protein RBP47C [Glycine soja]
3 Hb_000003_230 0.0612416992 - - PREDICTED: FAD synthetase 2, chloroplastic [Jatropha curcas]
4 Hb_002681_100 0.0638148227 - - PREDICTED: glucuronokinase 1 [Jatropha curcas]
5 Hb_006615_240 0.0641188496 - - PREDICTED: uncharacterized protein LOC105640673 [Jatropha curcas]
6 Hb_003582_060 0.0645880248 transcription factor TF Family: BBR-BPC PREDICTED: protein BASIC PENTACYSTEINE2-like isoform X1 [Jatropha curcas]
7 Hb_000684_380 0.0648885238 - - PREDICTED: 60S ribosomal protein L4 [Vitis vinifera]
8 Hb_024439_010 0.0657351808 - - PREDICTED: LAG1 longevity assurance homolog 2 [Jatropha curcas]
9 Hb_000340_180 0.067422897 - - PREDICTED: mitochondrial ubiquitin ligase activator of NFKB 1 [Jatropha curcas]
10 Hb_007676_080 0.0707106515 transcription factor TF Family: C3H PREDICTED: zinc finger CCCH domain-containing protein 14-like [Jatropha curcas]
11 Hb_000768_090 0.0731340666 - - PREDICTED: UTP--glucose-1-phosphate uridylyltransferase isoform X1 [Jatropha curcas]
12 Hb_003052_190 0.0759174189 - - PREDICTED: uncharacterized protein LOC105641937 isoform X2 [Jatropha curcas]
13 Hb_000390_300 0.0761561215 transcription factor TF Family: GNAT PREDICTED: histone acetyltransferase MCC1 [Jatropha curcas]
14 Hb_000827_050 0.0771021493 - - PREDICTED: tyrosine--tRNA ligase, cytoplasmic-like [Jatropha curcas]
15 Hb_000236_040 0.0775090178 - - PREDICTED: uncharacterized protein LOC105633150 isoform X1 [Jatropha curcas]
16 Hb_000465_160 0.0787650603 - - PREDICTED: uncharacterized protein LOC105632297 [Jatropha curcas]
17 Hb_008554_060 0.0795045102 - - PREDICTED: pre-mRNA-splicing factor SPF27 homolog [Jatropha curcas]
18 Hb_001511_060 0.0795389663 - - PREDICTED: sorting and assembly machinery component 50 homolog [Jatropha curcas]
19 Hb_001278_100 0.0795782555 - - PREDICTED: probable phosphopantothenoylcysteine decarboxylase [Jatropha curcas]
20 Hb_006573_190 0.0813745957 - - PREDICTED: probable NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 5, mitochondrial [Jatropha curcas]

Gene co-expression network

sample Hb_004058_030 Hb_004058_030 Hb_003304_020 Hb_003304_020 Hb_004058_030--Hb_003304_020 Hb_000003_230 Hb_000003_230 Hb_004058_030--Hb_000003_230 Hb_002681_100 Hb_002681_100 Hb_004058_030--Hb_002681_100 Hb_006615_240 Hb_006615_240 Hb_004058_030--Hb_006615_240 Hb_003582_060 Hb_003582_060 Hb_004058_030--Hb_003582_060 Hb_000684_380 Hb_000684_380 Hb_004058_030--Hb_000684_380 Hb_003304_020--Hb_000003_230 Hb_003304_020--Hb_003582_060 Hb_007676_080 Hb_007676_080 Hb_003304_020--Hb_007676_080 Hb_003052_190 Hb_003052_190 Hb_003304_020--Hb_003052_190 Hb_003304_020--Hb_002681_100 Hb_000003_230--Hb_007676_080 Hb_000003_230--Hb_003582_060 Hb_006573_190 Hb_006573_190 Hb_000003_230--Hb_006573_190 Hb_000003_230--Hb_006615_240 Hb_003057_060 Hb_003057_060 Hb_002681_100--Hb_003057_060 Hb_013575_010 Hb_013575_010 Hb_002681_100--Hb_013575_010 Hb_001511_060 Hb_001511_060 Hb_002681_100--Hb_001511_060 Hb_002681_100--Hb_006573_190 Hb_006615_240--Hb_003582_060 Hb_010098_050 Hb_010098_050 Hb_006615_240--Hb_010098_050 Hb_000390_300 Hb_000390_300 Hb_006615_240--Hb_000390_300 Hb_004109_170 Hb_004109_170 Hb_006615_240--Hb_004109_170 Hb_001341_150 Hb_001341_150 Hb_006615_240--Hb_001341_150 Hb_000221_190 Hb_000221_190 Hb_003582_060--Hb_000221_190 Hb_017895_040 Hb_017895_040 Hb_003582_060--Hb_017895_040 Hb_001300_150 Hb_001300_150 Hb_003582_060--Hb_001300_150 Hb_024958_010 Hb_024958_010 Hb_000684_380--Hb_024958_010 Hb_000589_120 Hb_000589_120 Hb_000684_380--Hb_000589_120 Hb_000768_090 Hb_000768_090 Hb_000684_380--Hb_000768_090 Hb_001359_050 Hb_001359_050 Hb_000684_380--Hb_001359_050 Hb_000331_550 Hb_000331_550 Hb_000684_380--Hb_000331_550
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
16.1519 15.4389 26.2297 21.3487 20.5953 17.3236
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
19.9244 38.6955 29.0732 21.8501 14.6059

CAGE analysis